SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene3090

Length: 894 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene3090

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8010	26/27

Source	Descriptions	Term	Type	Identity
AutoFact	3-dehydroquinate dehydratase/shikimate 5-dehydrogenase [Juglans regia]	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Blast2go	bifunctional 3-dehydroquinate dehydratase shikimate chloroplastic-like	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Shikimate dehydrogenase.	EC:1.1.1.25	-	0.0	79%

Source	KEGGs	Term	Type	Identity
Blast2go	Phenylalanine, tyrosine and tryptophan biosynthesis	00400		79%
Blast2go	Biosynthesis of phenylpropanoids	01061		79%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063		79%
Blast2go	Biosynthesis of plant hormones	01070		79%
Blast2go	Metabolic pathways	01100		79%
Blast2go	Biosynthesis of secondary metabolites	01110		79%
Blast2go		EC:4.2.1.1-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	aromatic amino acid family biosynthetic process	GO:0009073	Biological Process	79%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	79%
Blast2go	shikimate 3-dehydrogenase (NADP+) activity	GO:0004764	Molecular Function	79%
Blast2go	NADP binding	GO:0050661	Molecular Function	79%
Blast2go	3-dehydroquinate dehydratase activity	GO:0003855	Molecular Function	79%
Blast2go	plastid	GO:0009536	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	3-dehydroquinate dehydratase, active site	IPR018508	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	Dehydroquinase class I	IPR001381	-	-
Sma3	Shikimate dehydrogenase	IPR011342	-	-
Sma3	Shikimate dehydrogenase substrate binding, N-terminal	IPR013708	-	-
Sma3	Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase	IPR006151	-	-

Full-Lengther Next Prediction

SNPs (tot: 86)

Position	A %	C %	G %	T %	Probability
105	66			33	0.997452
107	33	33		33	0.997753
108		33	66		0.997452
111		33	66		0.997452
112			66	33	0.997452
113		33		66	0.997452
114	33			66	0.997452
282	75		25		0.996473
283	75			25	0.996473
284	75	25			0.996473
290		25	75		0.996473
294			25	75	0.996473
295	75		25		0.996473
296		25	75		0.996473
297			75	25	0.996473
299			75	25	0.996473
302		25		75	0.996473
303	75			25	0.996473
340		20		80	0.995493
341			20	80	0.995493
342	80			20	0.995493
344			20	80	0.995493
345	80			20	0.995493
353	80		20		0.995493
354		80	20		0.995493
355		20	80		0.995493
356	80			20	0.995493
358	80			20	0.995493
359	80	20			0.995493
360	20		80		0.995493
362	66	16		16	0.988813
363		16	83		0.994512
364	83			16	0.994512
365	83	16			0.994512
367	71	14		14	0.984337
369	14		71	14	0.984337
371		14	14	71	0.984337
372			71	28	1.0
373			85	14	0.993533
374	14		85		0.993533
375		14	85		0.993533
380	71		28		1.0
381		85		14	0.993533
382		14		85	0.993533
383	14		85		0.993533
384		14		85	0.993533
385	14			85	0.993533
386		28	71		1.0
387	14			85	0.993533
388	83	16			0.994512
391		87		12	0.992554
392		12	87		0.992554
393	12		75	12	0.975346
394		12	87		0.992554
395			12	87	0.992554
398	12		87		0.992554
399	87	12			0.992554
400	87	12			0.992554
401	87			12	0.992554
404			12	87	0.992554
405		12		87	0.992554
407	87		12		0.992554
409	87	12			0.992554
411		12	87		0.992554
412			87	12	0.992554
443		11	88		0.923564
448		11		88	0.923564
449		88		11	0.923564
450		88		11	0.923564
451	88		11		0.923564
454	88		11		0.923564
455		88		11	0.923564
457	11			88	0.923564
458		11	88		0.923564
459			88	11	0.923564
460		11	88		0.923564
461	11		88		0.923564
472		10	90		0.90298
474	90			10	0.90298
475	90		10		0.90298
479		10	90		0.90298
483		90	10		0.90298
485	90			10	0.90298
490		11	88		0.923564
491	11			88	0.923564
506		88		11	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain