SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene2992

Length: 469 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene2992
CGTCGTGACCTTGGCTGTCACTCAGAATTATCGTGTCTTTTTTTCTGGATCTTCTGCCAAGGCTGAGGTTATTGAAGCAGAACTTAACTCTGGCAGGCCACAAGAATCCTCATACACAGCTTTCAATCAAGGGCCGGATAGACACTTCAGTGTACAAGGACAAACTGATCAATGTTCAAAGCCCACTTCTGCGAATGTTAGAGAGGCAGCAGGTTCTTGTCGGCAATCAACAGCTTCAGCAAGCCAGCCACCCACTTTTCACCTCAGTGGGCAGGGAGCCTGGCAAGCCCTCATTGCCTATGAGGCCTGTGTGCGTCTTTGTCTCCGTGCATGGGCCAGTGGTCGCATGGAAGCTCCTGAATTCCTTCATAATGAGTGCATTGTTTGCGTAATGCCTTTGGACTACAGCAAATACTGTTGCAACCAGAGGAAGAACTGTTGAGAAATGATTCTGCAGATGCTGCCCTGG

Ace file of the UniGene uagpf_v2_unigene2992 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22433	10/10

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	42%
Blast2go	uncharacterized protein	-	-	5.13976e-14	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	5.13976e-14	62%

Source	InterPros	Term	Type	e value	Identity
Sma3	PAC motif	IPR001610	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5ALI1

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 477 aas, your sequence is shorter than subject: 147 - 1484

Fln protein: VVTLAVTQNYRVFFSGSSAKAEVIEAELNSGRPQESSYTAFNQGPDRHFSVQGQTDQCSKPTSANVREAAGSCRQSTASASQPPTFHLSGQGAWQALIAYEACVRLCLRAWASGRMEAPEFLHNECIVCVMPLDYSKYCCNQRKNC*

Protein Length: 148

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGAATTATCGTGTCTTTTTTTCTGGATCTTCTGCCAAGGCTGAGGTTATTGAAGCAGAACTTAACTCTGGCAGGCCACAAGAATCCTCATACACAGCTTTCAATCAAGGGCCGGATAGACACTTCAGTGTACAAGGACAAACTGATCAATGTTCAAAGCCCACTTCTGCGAATGTTAGAGAGGCAGCAGGTTCTTGTCGGCAATCAACAGCTTCAGCAAGCCAGCCACCCACTTTTCACCTCAGTGGGCAGGGAGCCTGGCAAGCCCTCATTGCCTATGAGGCCTGTGTGCGTCTTTGTCTCCGTGCATGGGCCAGTGGTCGCATGGAAGCTCCTGAATTCCTTCATAATGAGTGCATTGTTTGCGTAATGCCTTTGGACTACAGCAAATACTGTTGCAACCAGAGGAAGAACTGTTGAGAAATGATTCTGCAGATGCTGCCCTGG

Fln Alignment:

Contig2992___ELNSGRPQESSYTAFNQGPDRHFSVQGQTDQCSKPTSAN-VREAAGSCRQSTASA----SQPPTFHLSGQGAWQALIAYEACVRLCLRAWASGRMEAPEFLHNEC
A5ALI1_______________EINQDRDQISXSTVTINEPNTTKNIPSSTT--AQENSGNRIPDPSASIAETTASSGSLPARLPTFHASGQGPWCAVISYDACVRLCLHSWAGGCMEAPLFLDNEC

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
145	33		66		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain