SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene2966

Length: 753 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene2966

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2482	10/11

Source	Descriptions	Term	Type	Identity
AutoFact	Long chain acyl-CoA synthetase 7, peroxisomal n=2 Tax=Arabidopsis RepID=LACS7_ARATH	-	-	64%
FL-Next	sp=Long chain acyl-CoA synthetase 7, peroxisomal; Arabidopsis thaliana (Mouse-ear cress).	-	-	82%
Blast2go	long-chain acyl- synthetase 7	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Long-chain-fatty-acid--CoA ligase.	EC:6.2.1.3	-	0.0	81%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Fatty acid metabolism	00071		0.0	81%
Blast2go	Metabolic pathways	01100		0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	long-chain fatty acid metabolic process	GO:0001676	Biological Process	81%
Blast2go	response to ozone	GO:0010193	Biological Process	81%
Blast2go	response to salt stress	GO:0009651	Biological Process	81%
Blast2go	long-chain fatty acid-CoA ligase activity	GO:0004467	Molecular Function	81%
Blast2go	protein binding	GO:0005515	Molecular Function	81%
Blast2go	peroxisome	GO:0005777	Cellular Component	81%
Blast2go	membrane	GO:0016020	Cellular Component	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	AMP-dependent synthetase/ligase	IPR000873	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 50)

Position	A %	C %	G %	T %	Probability
71	25	75			0.996473
115	83	16			0.994512
116	83		16		0.994512
117	83			16	0.994512
118	83	16			0.994512
120			83	16	0.994512
121		83	16		0.994512
123	83	16			0.994512
125	83			16	0.994512
126	83		16		0.994512
129	83			16	0.994512
130	83		16		0.994512
131	83			16	0.994512
132		16	83		0.994512
133	16		83		0.994512
138	22		22	55	0.999999
140		22		66	0.999999
141			28	71	1.0
144	28		28		1.0
146	71	28			1.0
147	71			28	1.0
148	71			28	1.0
153	71		14		0.984337
155	71	14	14		0.984337
156	14			85	0.993533
158	85			14	0.993533
159	71	28			1.0
160	85			14	0.993533
161		14		85	0.993533
189		42		57	1.0
229	87	12			0.992554
230	37		62		1.0
231	87			12	0.992554
232		12	87		0.992554
234	87			12	0.992554
237	87	12			0.992554
238		12	87		0.992554
370		85	14		0.993533
371		85		14	0.993533
372	85	14			0.993533
373	85		14		0.993533
375	85		14		0.993533
377	85	14			0.993533
378	85	14			0.993533
379	85			14	0.993533
383	85		14		0.993533
384		14		85	0.993533
387			85	14	0.993533
391	14		85		0.993533
395	85	14			0.993533

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain