SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene2936

Length: 998 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene2936

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10053	50/52
SustainPine v2.0	sp_v2.0_unigene79149	1/52

Source	Descriptions	Term	Type	Identity
AutoFact	Golgi SNARE 12 protein n=4 Tax=Arabidopsis RepID=GOS12_ARATH	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	golgi snare 12 protein	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	cellular membrane fusion	GO:0006944	Biological Process	85%
Blast2go	intra-Golgi vesicle-mediated transport	GO:0006891	Biological Process	85%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	85%
Blast2go	ER to Golgi vesicle-mediated transport	GO:0006888	Biological Process	85%
Blast2go	SNARE binding	GO:0000149	Molecular Function	85%
Blast2go	Golgi membrane	GO:0000139	Cellular Component	85%
Blast2go	vacuole	GO:0005773	Cellular Component	85%
Blast2go	integral to membrane	GO:0016021	Cellular Component	85%
Blast2go	cis-Golgi network	GO:0005801	Cellular Component	85%
Blast2go	cytosol	GO:0005829	Cellular Component	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Vesicle transport v-SNARE, N-terminal	IPR007705	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 74)

Position	A %	C %	G %	T %	Probability
37	33			66	0.997452
39	33		66		0.997452
40	33			66	0.997452
41	33		66		0.997452
43		66	33		0.997452
48		33	66		0.997452
49	33	66			0.997452
50	33			66	0.997452
52			33	66	0.997452
55		66		33	0.997452
56	33			66	0.997452
57		66	33		0.997452
107	75	25			0.996473
108			25	75	0.996473
110	75	25			0.996473
111	75		25		0.996473
117	75			25	0.996473
122		25	75		0.996473
123			75	25	0.996473
124	75		25		0.996473
125			75	25	0.996473
127	80		20		0.995493
128		20		80	0.995493
129		20	60	20	0.99255
130		80	20		0.995493
132	20		80		0.995493
134		20	80		0.995493
138		80	20		0.995493
149	20			80	0.995493
217	83	16			0.994512
219	83			16	0.994512
220		16	83		0.994512
222			83	16	0.994512
223		83	16		0.994512
228	83			16	0.994512
230	83		16		0.994512
231		83	16		0.994512
232	83	16			0.994512
236		16	83		0.994512
238	83	16			0.994512
239			83	16	0.994512
347	80	20			0.995493
351	80			20	0.995493
352		80	20		0.995493
354		20	80		0.995493
355	80	20			0.995493
358			20	80	0.995493
359		80	20		0.995493
361	80			20	0.995493
364		25		75	0.996473
366		25		75	0.996473
370	25			75	0.996473
395	37	50			1.0
396	62		37		1.0
397	50			50	1.0
402	37			62	1.0
405	62			37	1.0
406	62			37	1.0
407	62		37		1.0
409	50	50			1.0
412	50			50	1.0
427	88	11			0.923564
429		88		11	0.923564
430		11		88	0.923564
443		11		88	0.923564
444	11		88		0.923564
446	88			11	0.923564
497	92		5	2	0.991359
499	92	5	2		0.991359
501	87		5	2	0.9224
503	94	5			0.997984
504	94	5			0.997984
505	92	5		2	0.991359
708		30		70	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain