SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene2900

Length: 704 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene2900

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5988	13/23
SustainPine v2.0	sp_v2.0_unigene20386	3/23
SustainPine v2.0	sp_v2.0_unigene63865	5/23

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleoside-diphosphate reductase R2 subunit; AltName: Full=Ribonucleotide reductase small subunit emb\|CAA63194.1\| ribonucleotide reductase R2 [Nicotiana tabacum]	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Blast2go	ribonucleotide reductase small subunit	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ribonucleoside-diphosphate reductase.	EC:1.17.4.1	-	0.0	85%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	85%
Blast2go	Pyrimidine metabolism	00240	85%
Blast2go	Glutathione metabolism	00480	85%
Blast2go	Metabolic pathways	01100	85%

Source	GOs	Term	Type	Identity
Blast2go	DNA replication	GO:0006260	Biological Process	85%
Blast2go	multicellular organismal development	GO:0007275	Biological Process	85%
Blast2go	regulation of cell cycle	GO:0051726	Biological Process	85%
Blast2go	deoxyribonucleoside diphosphate metabolic process	GO:0009186	Biological Process	85%
Blast2go	programmed cell death	GO:0012501	Biological Process	85%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	85%
Blast2go	DNA repair	GO:0006281	Biological Process	85%
Blast2go	transition metal ion binding	GO:0046914	Molecular Function	85%
Blast2go	ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor	GO:0004748	Molecular Function	85%
Blast2go	cytoplasm	GO:0005737	Cellular Component	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribonucleotide reductase	IPR000358	-	0.0	-
Sma3	Ribonucleotide reductase-related	IPR012348	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
164		16	83		0.994512
165			16	83	0.994512
169		16		83	0.994512
170	83	16			0.994512
178	83			16	0.994512
179		16	83		0.994512
181		14	71		0.984337
182		14	14	71	0.984337
185	14		85		0.993533
187			14	85	0.993533
188	14			85	0.993533
190		14		85	0.993533
191			85	14	0.993533
192	85			14	0.993533
193			14	85	0.993533
197		85	14		0.993533
200	14	85			0.993533
204		14	85		0.993533
205	14			85	0.993533
245	83		16		0.999991
247		16	83		0.999991
375		10		90	0.90298
377			90	10	0.90298
378	90	10			0.90298
387	90		10		0.90298
388	30	10	60		1.0
390	80			20	0.999996
392			90	10	0.90298
394		90	10		0.90298
398		10	90		0.90298
400		10		90	0.90298
526		50		50	1.0
630			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain