SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene2896

Length: 1387 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene2896

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8929	48/48

Source	Descriptions	Term	Type	Identity
AutoFact	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein [Arabidopsis thaliana] gb\|AAR24215.1\| At1g35180 [Arabidopsis thaliana] gb\|AAU05502.1\| At3g16870 [Arabidopsis thaliana] gb\|AEE31763.1\| TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containi	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	55%
Blast2go	lag1 and cln8 lipid-sensing domain containing protein	-	-	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	0.0	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	TRAM/LAG1/CLN8 homology domain	IPR006634	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9R7Z6

Fln msg:

Fln protein: MEMGQRVRTVAVGVVAWTVTFIGVRKILSKRSFDFCNRVVSLIHVAVALWLCSVSVEDWKRPLQPLASPATPLQIRALSMSLSYFIYDFSCCLFDSSISVSNCIHHSVSILGLGVGVVYATCGSELTGCLWLMEISNPFMHMRELLKELGYKDSRLSILNDICFAFIFTLARLMVGPYLVYLTITANNPLIVKVTSVGLQVVSIFWFYKIAKMVQYKIAKAKKSQKTL*

Protein Length: 230

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTGTCTAGTCACAATTTCTAGTTGTTTTGGGACCAGTGGTCCATGCACAACATTAACCGTCTGTTCCCTATCTCGACTGTTCTTTTCTCAATTCCATGGCATTTCTTCCATTGGCGACTCGCGGGTATCTTCCCATGGCGTCCATAGAGAATATTCCAATGCTGTTATCGTGCCATGTTTGAATCGCGACTCGCGTCAGTCACTGTCTGTGTCGATTTCTACCGATCTGTACTATAATTTGAATGATAGATAAATTTATTAGACATATTTCCATCGAGATTTGCTGATCAGGTAATGGAGTGAGGATGAAGTAGCCGTGGGGAAGAGTGGAGTGGAGGACAAGAGAA_-_ATGGAGATGGGGCAGAGAGTTAGAACAGTGGCGGTGGGAGTGGTTGCGTGGACTGTAACGTTCATAGGTGTCCGGAAGATTTTGTCGAAACGCTCCTTTGATTTTTGTAACAGGGTGGTTTCTCTCATCCATGTGGCTGTAGCTTTGTGGTTATGTTCTGTCTCTGTCGAAGATTGGAAACGCCCACTTCAACCTTTGGCCTCTCCTGCTACACCATTACAGATTCGTGCATTGTCGATGAGCCTGTCTTATTTCATTTATGACTTCAGTTGTTGCCTATTTGATTCTTCTATCAGTGTTTCCAACTGCATTCATCATTCAGTTAGCATATTGGGCCTTGGAGTTGGCGTTGTATATGCAACATGTGGGTCAGAGTTGACTGGATGCTTATGGCTTATGGAGATTTCAAATCCATTTATGCACATGAGGGAGCTCTTAAAGGAGTTAGGTTACAAGGACTCCAGGTTGAGTATTCTAAATGATATTTGTTTTGCTTTCATTTTTACACTTGCTAGATTGATGGTTGGACCTTATCTTGTATATCTCACAATAACAGCGAACAATCCATTGATTGTGAAGGTAACTTCAGTTGGCTTACAGGTAGTCAGTATCTTCTGGTTCTACAAGATAGCAAAAATGGTTCAATACAAGATAGCCAAAGCAAAGAAGTCACAAAAGACATTATAA___TTGTTCTTATTAAGCATAAGTAAGGCCCTTAATGCTGGAAGGGAAATCAAGTCTTACACTTGTTGGAAACTCTTCGTTAAGTAACAAAGTTTAAAGTGGGGGAAATCCAGGAGAGAAATTTGCTTACTGTGGTCTGTCCAAGTAAATCAGGCACGCAAAAAAACATGATGAAACAACCTTCCTTGGTTGCGAGTTCCTGTATTGTTTGGTTGTTATACTATGTACATATTCATAACTATGTTAAAAATTCATTCTGTTTGGCAGGTTTATCTCTGGACTTAAATATGATATCTTTTGTTCTGTTTATTCATATTGATTTCCTTTAC

Fln Alignment:

Contig2896___FIGVRKILSKRSFDFCNRVVSLIHVAVALWLCSVSVEDWKRPLQPLASPATPLQIRALSMSLSYFIYDFSCCLFDSSISVSNCIHHSVSIXXXXXXXXYATCGSELTGCLWLMEISNPFMHMRELLKELGYKDSRLSILNDICFAFIFTLARLMVGPYLVYLTITANNPLIVKVTSVGLQVVSIFWFYKIAKMVQYKIAKAKKSQKTL
B9R7Z6_______________FLLIRKVVPSRSFEFCNRLVSTIHAIVAVTLASISVEDWRCPVRPLASECTPSQMIALAVTVSYLIYDLLCCLFDTRPNLDNTIHHLVSIVGLGAGLVYHKSGTELVAALWITEISSPFLHLRELLKELGYRNTNLNLAADISFAVVFSVGRMVVGPYLAYATLTANNPIIIQAMAVGLQMVSAFWFYKIVRMVKYKLATRTTSKKVV

SNPs (tot: 125)

Position	A %	C %	G %	T %	Probability
52		40		60	1.0
53			40	60	1.0
55		40		60	1.0
57			60	40	1.0
63			60	40	1.0
69		60		40	1.0
70	60		40		1.0
76	60			40	1.0
77	60	40			1.0
78	40	60			1.0
79	80			20	0.995493
83	80		20		0.995493
202	71		28		1.0
207			28	71	1.0
208	28			71	1.0
209		28	71		1.0
210	71	28			1.0
211	71			28	1.0
213		71	28		1.0
218	71			28	1.0
220	28			71	1.0
222			71	28	1.0
224	18		81		0.999994
568	57			42	1.0
580		14		85	0.993533
587	85			14	0.993533
589	85		14		0.993533
621		14		85	0.993533
626			14	85	0.993533
627	85	14			0.993533
628		14	14	71	0.984337
629		28		71	1.0
631		83		16	0.994512
632	83		16		0.994512
633			20	80	0.995493
634		20		80	0.995493
636	80		20		0.995493
638		20	80		0.995493
658		20		80	0.995493
660	80	20			0.995493
664			20	80	0.995493
668	80		20		0.995493
669	20			80	0.995493
671	80	20			0.995493
672			80	20	0.995493
675			20	80	0.995493
676		20		80	0.995493
678		80	20		0.995493
679		83		16	0.994512
680	66	16	16		0.988813
681	83			16	0.994512
688	83	16			0.994512
692	83		16		0.994512
693			16	83	0.994512
695	83			16	0.994512
696			16	83	0.994512
700		16	83		0.994512
702		16		83	0.994512
745			83	16	0.994512
746		12	87		0.992554
747			87	12	0.992554
750	87			12	0.992554
751		12	87		0.992554
752	87			12	0.992554
753		25	75		1.0
754	12			87	0.992554
756		12	87		0.992554
757	87		12		0.992554
762		14	85		0.993533
767	14		85		0.993533
803	87			12	0.992554
805	87		12		0.992554
809		12	87		0.992554
810			87	12	0.992554
811			87	12	0.992554
812	87		12		0.992554
816		85	14		0.993533
818		14		85	0.993533
820	85	14			0.993533
821	85			14	0.993533
822		25	12		1.0
823	12		87		0.992554
824			87	12	0.992554
825	85	14			0.993533
828			12	87	0.992554
830		12	87		0.992554
831		12	87		0.992554
834	87		12		0.992554
836	87			12	0.992554
837	87		12		0.992554
838			87	12	0.992554
839		12	87		0.992554
862		11		88	0.923564
864	88			11	0.923564
865		11		88	0.923564
866	88		11		0.923564
868			11	88	0.923564
869	11			88	0.923564
870		11	88		0.923564
871		11		88	0.923564
874			11	88	0.923564
878			11	88	0.923564
883		11		88	0.923564
885		11		88	0.923564
886	11			88	0.923564
942	88			11	0.923564
974		10		90	0.90298
976			90	10	0.90298
978			10	90	0.90298
981		90	10		0.90298
983		10	90		0.90298
984		10	90		0.90298
986	90			10	0.90298
988			10	90	0.90298
990	90			10	0.90298
993	90	10			0.90298
994	10			90	0.90298
1002	10			90	0.90298
1003		10		90	0.90298
1014			90	9	0.999842
1071		42		57	1.0
1155		50		50	1.0
1233	55		44		1.0
1244		62		37	1.0
1248		71		28	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain