SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene2875

Length: 396 nt

UniGene Fasta

>uagpf_v2_unigene2875
CGTCGTGACCTTCGTCGTGACCTTGGCTGTCACTCAGGTTGGAAGCCTCCAGTGCGCCGGCAATTCTTCTTAGATTGCAATGAAATCGCTGAGCTTTGTGATCATGCAGAACGCATATTTTCCCGTGAACCAAGTGTTTTGCAAATCAGAGCCCCAGTAAAGATATTTGGGGACTTACATGGTCAGTTTGGGGATCTAATGCGTTTGTTTGATGAGTATGGTGCTCCATCAACAGCAGGAGATATAACGTATATCGACTATCTTTTTCTTGGGGATTATGTAGACAGAGGTCAACATAGTCTGGAAACAATTACTCTGCTGCTGGCTCTTAAGGTTGAGTATCCACACAATGTTCATTTGATCCGGGGAAATCATGAGGCTGCAGATATTAATGCA

Ace file of the UniGene uagpf_v2_unigene2875

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5935	7/8

Source	Descriptions	Term	Type	Identity
AutoFact	Serine/threonine-protein phosphatase (Fragment) n=5 Tax=Magnoliophyta RepID=D7T1Q5_VITVI	-	-	87%
FL-Next	sp=Serine/threonine-protein phosphatase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	54%
Blast2go	serine threonine-protein phosphatase bsl2-like	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	92%
Blast2go	iron ion binding	GO:0005506	Molecular Function	92%
Blast2go	manganese ion binding	GO:0030145	Molecular Function	92%
Blast2go	cytosol	GO:0005829	Cellular Component	92%
Blast2go	plasma membrane	GO:0005886	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S16	IPR000307	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	IPR006186	-	-
Sma3	Kelch repeat type 1	IPR006652	-	-
Sma3	Kelch repeat type 2	IPR011498	-	-
Sma3	Serine/threonine protein phosphatase, BSU1	IPR012391	-	-
Sma3	Kelch-type beta propeller	IPR015915	-	-
Sma3	Galactose oxidase, beta-propeller	IPR015916	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PPR8

Fln msg: Distance to subject end: 189 aas, atg_distance in limit (1-15): atg_distance = 4, W2: There is no M at the beginning, your sequence is shorter than subject: 132 - 318

Fln protein: RRDLRRDLGCHSGWKPPVRRQFFLDCNEIAELCDHAERIFSREPSVLQIRAPVKIFGDLHGQFGDLMRLFDEYGAPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKVEYPHNVHLIRGNHEAADINA

Protein Length: 133

Fln nts: CGTCGTGACCTTCGTCGTGACCTTGGCTGTCACTCAGGTTGGAAGCCTCCAGTGCGCCGGCAATTCTTCTTAGATTGCAATGAAATCGCTGAGCTTTGTGATCATGCAGAACGCATATTTTCCCGTGAACCAAGTGTTTTGCAAATCAGAGCCCCAGTAAAGATATTTGGGGACTTACATGGTCAGTTTGGGGATCTAATGCGTTTGTTTGATGAGTATGGTGCTCCATCAACAGCAGGAGATATAACGTATATCGACTATCTTTTTCTTGGGGATTATGTAGACAGAGGTCAACATAGTCTGGAAACAATTACTCTGCTGCTGGCTCTTAAGGTTGAGTATCCACACAATGTTCATTTGATCCGGGGAAATCATGAGGCTGCAGATATTAATGCA

Fln Alignment:

Contig2875___EIAELCDHAERIFSREPSVLQIRAPVKIFGDLHGQFGDLMRLFDEYGAPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKVEYPHNVHLIRGNHEAADIN
C0PPR8_______________EVRQLCILSKDIFMKQPNLLELEAPVKICGDVHGQYSDLLRLFEYGGLPPES------NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASIN

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
183	88		11		0.923564
185		11	88		0.923564
188		88	11		0.923564
190		11	88		0.923564
191		11		77	0.968132
196		11	88		0.923564
197			88	11	0.923564
198	88		11		0.923564
203	88	11			0.923564
207	11		88		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain