SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene2874

Length: 1166 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene2874

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6366	33/34

Source	Descriptions	Term	Type	Identity
AutoFact	NAC domain protein, IPR003441 n=1 Tax=Populus trichocarpa RepID=B9IJW7_POPTR	-	-	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	63%
Blast2go	protein fez-like	-	-	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA binding	GO:0003677	Molecular Function	0.0	79%

Source	InterPros	Term	Type	Identity
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	No apical meristem (NAM) protein	IPR003441	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NS66

Fln msg: Separated hits, possible frame ERROR between 123 and 149, query STOP codon too far from subject stop. Distance to subject end: 84 aas, putative chimeric sequence, your sequence is shorter than subject: 173 - 324

Fln protein: RRDLGCHSFYCPRDRKYRNSARPNRVTSAGFWKATGTDRPxxxxxxxxxxLGLKKSLVFYKGRAAKGIKTDWMMHEFRLPTAADSKGSLDKNLPPNDAWAICRIFKKNTISQRALSHAWAPPLAERRVESISSPMNSDMVSGNCMGAVNFIHDPEEQSNETSVVTLAVTQSL*

Protein Length: 174

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTACTGCCCAAGGGACAGGAAGTACCGCAACAGTGCTCGACCCAACAGAGTAACATCTGCAGGTTTCTGGAAAGCCACTGGCACAGACCGACCAATxxxxxxxxxxxxxxxxxxxxxxxxxxxACTTGGCCTCAAAAAATCTCTTGTTTTCTACAAAGGGAGGGCAGCCAAAGGAATCAAAACCGACTGGATGATGCATGAATTTCGTCTTCCAACTGCAGCAGATTCTAAAGGCTCCCTAGACAAGAATCTGCCTCCTAATGATGCATGGGCTATTTGCAGAATTTTTAAAAAGAACACAATTTCACAGAGAGCTCTGTCTCATGCATGGGCACCTCCATTGGCTGAGAGAAGAGTGGAATCTATCAGCTCACCCATGAATTCAGACATGGTCTCGGGCAACTGCATGGGAGCTGTTAACTTCATTCATGATCCCGAGGAACAGTCCAATGAAACTAGCGTCGTGACCTTGGCTGTCACTCAATCTCTCTAATTCCCAATCCAGTGATCATCAAACCTACAACCATGATTTCCAGCCAAAGAATGTGGAAATTTCCATGGAGGCTTCCTACGATACGGGCTTGGATGGATCAGACAAAGTAGAGTCTAGCAAATCAATGCCATCTTTCTGTGGTTTAAAATCAATGGGTCTGCCAAATCTGGAGTTACCCAACAACTACTATTCTCATGTGGATCCTTTATCTCTGAAGGGCACCCTTGATCTAGTAAGTTGCATGCTGCAGATGTCTCCTATGGCAGAGTTTTCTGTAAGACCATCAAGTTCAGATATGACAGCTGCTTTTAGCGATCCCAAGACAAATAACCAAAATTTCTCATTCTTCCAACCAGAAGCAACTACTGATCATCATGAAGATATATTTCTGAAACACAACATTACCAATGGCCACCACCTTAGTCCCAGATCAGCATCCAGTAATAATCTTTTGCAATTTCCACCTCAGTTGTATGATGTTTTGAGGAGTAATGTTTCATGGGATTAGCCCACCTACACTGTGGAGCTTTATGCCACATAAATTTTCAAATTAGATATGTGTTCTGATTAACCAGATAGACGTCGCGCATACCAACTATTGTGGATCACAGAGATAAACTTCATAAGATACCAGTCAGCAATAAAGTTG

Fln Alignment:

Contig2874___FYCPRDRKYRNSARPNRVTSAGFWKATGTDRPIxxxxxxxxxLGLKKSLVFYKGRAAKGIKTDWMMHEFRLPTAADSKGSLDKNLPPNDAWAICRIFKKNTISQRAL
A9NS66_______________FFSPRDRKYPNGSRPNRAAGSGYWKATGTDKPVxxxxxxxxxVGVKKALVFYKGKAPRGIKTNWIMHEYRLADSA-SKAAKRKGSIRLDDWVLCRIYEKHYASQKAV

SNPs (tot: 96)

Position	A %	C %	G %	T %	Probability
307		25		75	0.996473
309		75		25	0.996473
310	75	25			0.996473
312	75			25	0.996473
313	75		25		0.996473
314	25			75	0.996473
315		25		75	0.996473
316		25		75	0.996473
319	75		25		0.996473
320	75		25		0.996473
321	75	25			0.996473
322	75			25	0.996473
323	75		25		0.996473
324			75	25	0.996473
325	75	25			0.996473
328	75			25	0.996473
337	80		20		0.995493
338		80		20	0.995493
339	80	20			0.995493
341	80			20	0.995493
344		20	80		0.995493
347		80		20	0.995493
348			20	80	0.995493
352		80	20		0.995493
358		20	80		0.995493
359	20	80			0.995493
492	42	57			1.0
493	42		57		1.0
494	42			57	1.0
496		42	57		1.0
497	42			57	1.0
501		57		42	1.0
503		42		57	1.0
504		42	57		1.0
505	42		57		1.0
511	57			42	1.0
512	42	57			1.0
513			42	57	1.0
515	28	14			1.0
525	87	12			0.992554
526	87		12		0.992554
528			14	85	0.993533
529	14	85			0.993533
532	85			14	0.993533
533	85			14	0.993533
534			14	85	0.993533
535		85	14		0.993533
537	85			14	0.993533
540		14	85		0.993533
547	85			14	0.993533
632	85	14			0.993533
635	85	14			0.993533
637	85			14	0.993533
639		14		85	0.993533
642	85			14	0.993533
644		85	14		0.993533
645	85	14			0.993533
646	85			14	0.993533
647	85		14		0.993533
651	85	14			0.993533
655	14	85			0.993533
694		14		85	0.993533
696			85	14	0.993533
697	83	16			0.994512
700			16	83	0.994512
704		83		16	0.994512
705	83		16		0.994512
706	83		16		0.994512
708	83			16	0.994512
709	83		16		0.994512
710		83		16	0.994512
711		16		83	0.994512
715	83	16			0.994512
716	16			83	0.994512
765		14		85	0.993533
768	85		14		0.993533
771	14	85			0.993533
772		14		85	0.993533
773		14	85		0.993533
774		85		14	0.993533
775	85		14		0.993533
777	85	14			0.993533
791	90		9		0.999872
792			84	10	0.999846
793	88	11			0.999952
796			11	88	0.999937
797	11			88	0.999937
798		11		88	0.999937
802			11	88	0.999937
803	88	11			0.999937
804	88			11	0.999937
806	88			11	0.999937
808	11	88			0.999937
809	88	11			0.999937
855	60			40	1.0
1148		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain