SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene2841

Length: 672 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene uagpf_v2_unigene2841 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21785	9/9

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Poly [ADP-ribose] polymerase 3; Short=PARP-3; AltName: Full=NAD(+) ADP-ribosyltransferase 3; Short=ADPRT-3; AltName: Full=Poly[ADP-ribose] synthase 3 gb\|AAD51626.1\|AF169023_1 seed maturation protein PM38 [Glycine max]	-	-	9.0e-37	42%
FL-Next	sp=Poly [ADP-ribose] polymerase 3; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	43%
Blast2go	poly	-	-	1.09301e-42	58%

Source	InterPros	Term	Type	Identity
Sma3	BRCT domain	IPR001357	-	-
Sma3	DNA-binding SAP	IPR003034	-	-
Sma3	Poly(ADP-ribose) polymerase, regulatory domain	IPR004102	-	-
Sma3	WGR domain	IPR008893	-	-
Sma3	Poly(ADP-ribose) polymerase, catalytic domain	IPR012317	-	-
Sma3	PADR1	IPR012982	-	-

Full-Lengther Next Prediction

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
362		88	11		0.923564
363	11	88			0.923564
364	88		11		0.923564
366	88		11		0.923564
368	88	11			0.923564
369	11			88	0.923564
371	11	88			0.923564
372		11		88	0.923564
373	11		88		0.923564
375		11	88		0.923564
377	77	11		11	0.968132
379	22		77		0.999999
380	11	11		77	0.968132
382	88		11		0.923564
384	88		11		0.923564
391		87	12		0.992554
397	71		28		1.0
398		28		71	1.0
409		33		66	1.0
411	33	66			1.0
413	66		33		1.0
423	50	50			1.0
424			50	50	1.0
427	50			50	1.0
429	50			50	1.0
433	50		50		1.0
437	50			50	1.0
438	50	50			1.0
439	50		50		1.0
443		50		50	1.0
444			50	50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain