SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene2835

Length: 493 nt

UniGene Fasta

>uagpf_v2_unigene2835
CGTCGTGACCTTGGCTGTCACTCATTTGGTCGTACATCAACACCTGAGCAGACAGAAATCTGCCAGGCAATTTTTCAAAACCTTTGGGAGAGAAATTGGCTTTCTGAGAATACGATGCAGCAGCCATATTGTGATACATGCCGTCGGTTTTTGGCTGACTGGTTTGTGGAGGGCATTTGCCCCACCCCTGGATGTGGCTATGAGGATGCACGAGGTGATCAGTGTGAAAGTTGTGGCAAACTGTTAAATCCAATAGAACTTTTGAAACCTAGGTGCAAGCTCTGTCGAAATACTCCTCGGATTCGTGATACAGAACACTTATTCTTAGAGCTCCCAAAGTTAAAGGACAGGTTGGAAGAATATATCAAGTTTATGTCGGTTGTTGGTGGTTGGAGTCAAAATGCTGTTCAGGCTACAAATTCTTGGACCAGGGAAGGACTGAAGCCCCGCTGTATTACAAGGGATCTCAAGTGGGGTGTTCCTGTTCCTCTGG

Ace file of the UniGene uagpf_v2_unigene2835

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1002	3/6
SustainPine v2.0	sp_v2.0_unigene25264	2/6

Source	Descriptions	Term	Type	Identity
AutoFact	methionyl-tRNA synthetase [Oryza sativa]	-	-	71%
FL-Next	sp=Probable methionyl-tRNA synthetase; Arabidopsis thaliana (Mouse-ear cress).	-	-	74%
Blast2go	methionyl-trna synthetase	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:6.1.1.1-	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	82%
Blast2go	methionyl-tRNA aminoacylation	GO:0006431	Biological Process	82%
Blast2go	ATP binding	GO:0005524	Molecular Function	82%
Blast2go	methionine-tRNA ligase activity	GO:0004825	Molecular Function	82%
Blast2go	tRNA binding	GO:0000049	Molecular Function	82%
Blast2go	cytosol	GO:0005829	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Methionyl/Leucyl tRNA synthetase	IPR015413	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3		IPR002304	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	Methionyl-tRNA synthetase	IPR014758	-	-
Sma3	tRNA-binding domain	IPR002547	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SVN5

Fln msg: Distance to subject end: 535 aas, your sequence is shorter than subject: 164 - 797

Fln protein: RRDLGCHSFGRTSTPEQTEICQAIFQNLWERNWLSENTMQQPYCDTCRRFLADWFVEGICPTPGCGYEDARGDQCESCGKLLNPIELLKPRCKLCRNTPRIRDTEHLFLELPKLKDRLEEYIKFMSVVGGWSQNAVQATNSWTREGLKPRCITRDLKWGVPVPL

Protein Length: 165

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTGGTCGTACATCAACACCTGAGCAGACAGAAATCTGCCAGGCAATTTTTCAAAACCTTTGGGAGAGAAATTGGCTTTCTGAGAATACGATGCAGCAGCCATATTGTGATACATGCCGTCGGTTTTTGGCTGACTGGTTTGTGGAGGGCATTTGCCCCACCCCTGGATGTGGCTATGAGGATGCACGAGGTGATCAGTGTGAAAGTTGTGGCAAACTGTTAAATCCAATAGAACTTTTGAAACCTAGGTGCAAGCTCTGTCGAAATACTCCTCGGATTCGTGATACAGAACACTTATTCTTAGAGCTCCCAAAGTTAAAGGACAGGTTGGAAGAATATATCAAGTTTATGTCGGTTGTTGGTGGTTGGAGTCAAAATGCTGTTCAGGCTACAAATTCTTGGACCAGGGAAGGACTGAAGCCCCGCTGTATTACAAGGGATCTCAAGTGGGGTGTTCCTGTTCCTCTGG

Fln Alignment:

Contig2835___FGRTSTPEQTEICQAIFQNLWERNWLSENTMQQPYCDTCRRFLADWFVEGICPTPGCGYEDARGDQCESCGKLLNPIELLKPRCKLCRNTPRIRDTEHLFLELPKLKDRLEEYIKFMSVVGGWSQNAVQATNSWTREGLKPRCITRDLKWGVPVP
Q9SVN5_______________FGRTSTPEQTEVCQAIFNKLWDNKWLSENTMQQLYCDTCKKFLADRLVEGSCPFEGCNYDSARGDQCEKCGKLLNPTELKDPKCKVCQNTPRIRDTDHLFIELPLLKDRLEAYIKKTSVTGSWSQNAIQTTNAWLRDGLRQRCITRDLKWGVPVP

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
142	50	50			1.0
143	50		50		1.0
148		50	50		1.0
149	50			50	1.0
150		50		50	1.0
151		50		50	1.0
154	50		50		1.0
157	50			50	1.0
163	50			50	1.0
164		50	50		1.0
165	50		50		1.0
183		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain