SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene2801

Length: 1293 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene2801

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1945	48/55
SustainPine v2.0	sp_v2.0_unigene79754	3/55

Source	Descriptions	Term	Type	Identity
AutoFact	ATPP2-A13, putative n=1 Tax=Ricinus communis RepID=B9SRL8_RICCO	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	f-box family protein	-	-	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	carbohydrate binding	GO:0030246	Molecular Function	0.0	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NS34

Fln msg:

Fln protein: MGGNLSRPYGGEGETPYPGLADIPESCVARIFEHLGPIDICKLAGLNWAFKGASSCDYVWEQKLPICYQEMLSKLFISEPHFLSKKQIYALLCHPISFDDATKEVWLDRATGGVCFSISARAMAITGIDDHRYWRWIPYDESRFHEAAYLQQHWWFEVDGVVKFQLPAGEYSLSFRLRLGRPSRRLGRRIYVFDQIHGWDLKPVRFSLSTSDGQHAIRECYLEEPGEIEGNGIVSYARGNWTDYYVGNFEVKNDSKVTEVKFSMTQIDCTHSKGGLCLDLVSIIPSKLRKETVKDL*

Protein Length: 298

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCGGGTTCGCGGACATGAATTGTTTCAAGCCAAATCCGAGATAAGCTCAGGAGAAACGAAGAATTGGGAGCGTTAGTAACAAGGGGCCGACGATTAAGTCTGTTAGTGTTCGTGTGGGATTA_-_ATGGGTGGGAACCTCTCACGGCCCTACGGAGGAGAGGGAGAGACGCCGTATCCAGGGTTGGCTGATATACCAGAGAGTTGCGTTGCGAGGATTTTCGAGCACTTGGGTCCGATTGACATATGCAAGCTTGCTGGTCTAAATTGGGCCTTCAAGGGCGCGTCTTCTTGTGATTATGTGTGGGAGCAGAAATTGCCTATATGTTACCAGGAGATGCTTTCCAAACTGTTCATCTCAGAGCCCCATTTTCTCTCCAAGAAGCAGATATACGCTCTTCTTTGTCACCCAATTTCATTCGACGATGCCACCAAGGAGGTTTGGCTGGATAGGGCTACAGGAGGAGTCTGCTTTTCAATTTCTGCAAGAGCAATGGCCATCACTGGAATAGATGATCATCGTTACTGGAGATGGATTCCGTATGATGAGTCCAGGTTCCATGAAGCAGCATATCTTCAGCAACATTGGTGGTTTGAAGTAGATGGTGTTGTGAAATTTCAGCTTCCTGCAGGAGAATACAGTCTTTCTTTCAGGTTACGACTTGGAAGGCCTTCTAGAAGATTGGGTCGTCGGATTTATGTCTTTGATCAAATTCATGGATGGGACTTGAAACCTGTTCGGTTCTCTCTTTCTACATCTGATGGTCAGCATGCTATACGAGAGTGCTATTTGGAAGAGCCTGGTGAAATTGAAGGTAATGGCATTGTGAGTTATGCTCGTGGAAACTGGACTGACTATTATGTTGGCAACTTTGAGGTTAAGAACGATAGCAAAGTGACAGAAGTCAAGTTCTCCATGACACAAATTGATTGCACACATTCCAAAGGCGGTCTTTGCTTAGACCTCGTTTCAATTATTCCTAGCAAGCTTCGGAAGGAAACAGTTAAGGATTTGTAA___ATATTAGGTTCCCCCTCTCCACCCCCCCTAGAAGGATTGGGCAGTTTAAAAATACAGTAATATTGACATGCAGTTTCCATTTAGGATCTGAAAATTCTATACTGTGAGTCATTGCTACTGTTTGTGTGCAGATATGAAAGCTGATTGCATACAATAGAGTTAGTAAAATAAGGAAGAAATATTACGAGGATCTGCACTTGATGTATTTGCTGATTAAATGGCATGAATTTATGTAATACTGCTCTCAGGCCCTTGT

Fln Alignment:

Contig2801___MGGNLSRXXXXXXXXXXXXLADIPESCVARIFEHLGPIDICKLAGLNWAFKGASSCDYVWEQKLPICYQEMLSKLFISEPHFLSKKQIYALLCHPISFDDATKEVWLDRATGGVCFSISARAMAITGIDDHRYWRWIPYDESRFHEAAYLQQHWWFEVDGVVKFQLPAGEYXXXXXXXXXXXXXXXXXXIYVFDQIHGWDLKPVRFSLSTSDGQHAIRECYLEEPGEIEGNGIVSYARGNWTDYYVGNFEVKNDSKVTEVKFSMTQIDCTHSKGGLCLDLVSIIPSKLRKETVKDL
A9NS34_______________MGGNLSRPYEGEGETPYPGLADIPESCVARIFQHLGPVDICKLAGLNWAFKGASSCDYVWEQKLPICYQEMLSKLFISEPHFLSKKQIYAHLCHPISFDDATKEVWLDRATGGVCLSISARAMAITGIDDHRYWRWIPYDESRFHEAAYLQQHWWFEVDGVVKFQLPAGEYSLSFRLRLGRPSRRLGRRIYVFDHIHGWDLKPVRFSLSTSDGQHAIRECYLEEPGEIEGNGIVSDARGKWTDYYVGEFEVKNESKVTEVKFSMTQIDCTHSKGGLCLDLVSIVPSKLRKETMKDL

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
217		80		20	0.995493
218	80	20			0.995493
220	80			20	0.995493
223		20	80		0.995493
229		20		80	0.995493
233		20	80		0.995493
234	80			20	0.995493
235		20	80		0.995493
236	25		75		0.996473
476			30	70	1.0
477	70			30	1.0
479	70		30		1.0
480			70	30	1.0
483		30	70		1.0
484		30	70		1.0
485	70			30	1.0
488			30	70	1.0
492		70		30	1.0
493		30		70	1.0
494	30			70	1.0
495		30		70	1.0
694			33	66	0.997452
698			33	66	0.997452
699	66			33	0.997452
703		33	66		0.997452
704	66	33			0.997452
709		33	66		0.997452
760			68	31	1.0
761			25	75	1.0
762			25	75	1.0
764			75	25	1.0
768	25			75	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain