SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene2773

Length: 882 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene2773

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9411	17/18

Source	Descriptions	Term	Type	Identity
AutoFact	pfam03145, Sina, Seven in absentia protein family	-	-	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	73%
Blast2go	ubiquitin ligase	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	88%

Source	GOs	Term	Type	Identity
Blast2go	multicellular organismal development	GO:0007275	Biological Process	88%
Blast2go	protein ubiquitination	GO:0016567	Biological Process	88%
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	88%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	88%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	88%
Blast2go	nucleus	GO:0005634	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Sma3	Seven-in-absentia protein, sina	IPR004162	-	-
Sma3	Seven-in-absentia protein, TRAF-like domain	IPR018121	-	-
Sma3	Seven In Absentia Homolog-type	IPR013323	-	-
Sma3	TRAF-type	IPR013322	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, SIAH-type	IPR013010	-	-

Full-Lengther Next Prediction

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
90	83		16		0.994512
93	83	16			0.994512
94			83	16	0.994512
95	75	12		12	0.975346
97			12	87	0.992554
98		12	87		0.992554
100			25	75	1.0
101	87			12	0.992554
103	87			12	0.992554
106	75	25			1.0
108		14		85	0.993533
109	14	14		71	0.984337
110	14			85	0.993533
113	14			85	0.993533
118	66			33	1.0
289	12		87		0.992554
290	87		12		0.992554
384		80	20		0.995493
390	20			80	0.995493
392		20	80		0.995493
398		80		20	0.995493
400		80		20	0.995493
404			80	20	0.995493
524			71	28	1.0
525		28		71	1.0
528		71	28		1.0
529	28	71			1.0
533		71		28	1.0
536			28	71	1.0
537	71	28			1.0
538			71	28	1.0
544			71	28	1.0
545	71	28			1.0
573		14		85	0.993533
575	85			14	0.993533
576	85		14		0.993533
578	85	14			0.993533
579		14	85		0.993533
580			85	14	0.993533
585	85			14	0.993533
714	33		66		1.0
840		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain