SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene2772

Length: 1126 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene2772

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9718	9/32
SustainPine v2.0	sp_v2.0_unigene16741	21/32

Source	Descriptions	Term	Type	Identity
AutoFact	Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RQZ0_RICCO	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	pentatricopeptide repeat-containing	-	-	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	74%

Source	InterPros	Term	Type	Identity
Sma3	Alpha-isopropylmalate/homocitrate synthase, conserved site	IPR002034	-	-
Sma3	Smr protein/MutS2 C-terminal	IPR002625	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Ataxin-2, C-terminal	IPR009818	-	-
Sma3	Domain of unknown function DUF1771	IPR013899	-	-

Full-Lengther Next Prediction

SNPs (tot: 91)

Position	A %	C %	G %	T %	Probability
264		20	80		0.995493
266	80			20	0.995493
271	60	40			1.0
272	20	20	60		0.99255
276			20	80	0.995493
277	60			40	1.0
278	20		80		0.995493
279		60	40		1.0
280		40	60		1.0
282	80			20	0.995493
290	20		80		0.995493
356	20	80			0.995493
358		80		20	0.995493
363	80			20	0.995493
364	80	20			0.995493
365		20	80		0.995493
366	20	80			0.995493
369	80		20		0.995493
370		80		20	0.995493
372		16		83	0.994512
374	16			83	0.994512
375		83		16	0.994512
376	66			16	0.988813
378			83	16	0.994512
381	20	20	20	40	0.994159
383	40	20			1.0
384		40		60	1.0
385	80			20	0.995493
386	60	20		20	0.99255
387			80	20	0.995493
391		60	40		1.0
397	75	25			0.996473
398	75			25	0.996473
399		25	75		0.996473
400	25		75		0.996473
492	75		25		0.996473
577			16	83	0.994512
589		85	14		0.993533
590			14	85	0.993533
591		14		85	0.993533
592	14	14	71		0.984337
593		85	14		0.993533
595	14		85		0.993533
596	14		85		0.993533
597		14		85	0.993533
600		85		14	0.993533
601		85	14		0.993533
603		14		85	0.993533
604	85			14	0.993533
605	85		14		0.993533
607	85	14			0.993533
609	57	14			1.0
610			85	14	0.993533
622		11	88		0.923564
628		87		12	0.992554
630	12		87		0.992554
632	87	12			0.992554
633	87			12	0.992554
634		87		12	0.992554
635	87		12		0.992554
639	14			85	0.993533
640		14		85	0.993533
642	85	14			0.993533
671	87	12			0.992554
673			87	12	0.992554
674		12	87		0.992554
675	87		12		0.992554
677		87	12		0.992554
680		12	87		0.992554
682	87			12	0.992554
683		87	12		0.992554
684	87		12		0.992554
686		87		12	0.992554
687	87		12		0.992554
688			87	12	0.992554
691	87			12	0.992554
692		12	87		0.992554
693	12		87		0.992554
698		83	16		0.999991
700		16	83		0.999991
701		83	16		0.999991
704	16	83			0.999991
705		16		83	0.999991
706		16	83		0.999991
710	83		16		0.999991
711	83	16			0.999991
712	83			16	0.999991
714			83	16	0.999991
715		16		83	0.999991
856		14	85		0.999981
858	85			14	0.999981

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain