SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene2757

Length: 538 nt

UniGene Fasta

>uagpf_v2_unigene2757
CGTCGTGACCTTGGCTGTCACTCAATTTGTAAATCCGAGTATTGCGTAAATTAAAAGCGAAATCTAAAAGGCGTCGTGACCTTGGCTGTCACTTCAGTATATGTATAATTCTGGGCTGGTTTGTGAAAGAAATGTGTAGCGAGCTCTGCTACCAAAGTTGCCCCGTGTTGCACACGAGTAGGGCTAGTTACCAGTAATAAACATGGCTGCCCATCTGCCTCTATTTGTCAAAGGATCTATATTTTCTCTACCATCATCGACATCGACGTCTTCTTCCTGTACGTATTCGAGCATATCGCATACAGCGGCATCTCCTGGATTTCACTCATCTCCAGCAGCAGCCAATAAATCTGTAAAATTGGGAACGATGCAGAGGATGGATGGTGTCAGGTCGGTGAAGCACCGAATGACAAGTCTGCATGCAAAGATGGAGAAGAGGCAACAGATTAAGGCATCGGCCCAGGCACCAAATGGGACCAACACTCATCCAGATTATGTCCCAGAAGCCAACTTTTACAAAGTAGAAGCAATATTGAGG

Ace file of the UniGene uagpf_v2_unigene2757

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17293	11/12

Source	Descriptions	Term	Type	Identity
AutoFact	PII-like protein n=1 Tax=Pinus pinaster RepID=Q70YP6_PINPS	-	-	87%
FL-Next	tr=PII-like protein; Pinus pinaster (Maritime pine).	-	-	100%
Blast2go	pii protein	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	regulation of fatty acid biosynthetic process	GO:0042304	Biological Process	85%
Blast2go	response to sucrose stimulus	GO:0009744	Biological Process	85%
Blast2go	anthocyanin biosynthetic process	GO:0009718	Biological Process	85%
Blast2go	response to light stimulus	GO:0009416	Biological Process	85%
Blast2go	nitrogen compound metabolic process	GO:0006807	Biological Process	85%
Blast2go	acetylglutamate kinase regulator activity	GO:0010307	Molecular Function	85%
Blast2go	oxygen transporter activity	GO:0005344	Molecular Function	85%
Blast2go	oxygen binding	GO:0019825	Molecular Function	85%
Blast2go	ATP binding	GO:0005524	Molecular Function	85%
Blast2go	protein binding	GO:0005515	Molecular Function	85%
Blast2go	magnesium ion binding	GO:0000287	Molecular Function	85%
Blast2go	cell wall	GO:0005618	Cellular Component	85%
Blast2go	chloroplast	GO:0009507	Cellular Component	85%
Blast2go	plasma membrane	GO:0005886	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	Nitrogen regulatory protein PII	IPR002187	-	-
Sma3	Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal	IPR015867	-	-
Sma3	Nitrogen regulatory protein PII, conserved site	IPR017918	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q70YP6

Fln msg: Distance to subject end: 131 aas, your sequence is shorter than subject: 112 - 243

Fln protein: MAAHLPLFVKGSIFSLPSSTSTSSSCTYSSISHTAASPGFHSSPAAANKSVKLGTMQRMDGVRSVKHRMTSLHAKMEKRQQIKASAQAPNGTNTHPDYVPEANFYKVEAILR

Protein Length: 113

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTGTAAATCCGAGTATTGCGTAAATTAAAAGCGAAATCTAAAAGGCGTCGTGACCTTGGCTGTCACTTCAGTATATGTATAATTCTGGGCTGGTTTGTGAAAGAAATGTGTAGCGAGCTCTGCTACCAAAGTTGCCCCGTGTTGCACACGAGTAGGGCTAGTTACCAGTAATAAAC_-_ATGGCTGCCCATCTGCCTCTATTTGTCAAAGGATCTATATTTTCTCTACCATCATCGACATCGACGTCTTCTTCCTGTACGTATTCGAGCATATCGCATACAGCGGCATCTCCTGGATTTCACTCATCTCCAGCAGCAGCCAATAAATCTGTAAAATTGGGAACGATGCAGAGGATGGATGGTGTCAGGTCGGTGAAGCACCGAATGACAAGTCTGCATGCAAAGATGGAGAAGAGGCAACAGATTAAGGCATCGGCCCAGGCACCAAATGGGACCAACACTCATCCAGATTATGTCCCAGAAGCCAACTTTTACAAAGTAGAAGCAATATTGAGG

Fln Alignment:

Contig2757___MAAHLPLFVKGXXXXXXXXXXXXXXXXXXXXXXXAASPGFHSSPAAANKSVKLGTMQRMDGVRSVKHRMTSLHAKMEKRQQIKASAQAPNGTNTHPDYVPEANFYKVEAILR
Q70YP6_______________MAAHLPLFVKGSIFSLPSSTSTSSSCTYSSISHTAASPGFHSSPAAANKSVKLGTMQRMDGVRSVKHRMTSLHAKMEKRQQIKASAQAPNGTNTHPDYVPEANFYKVEAILR

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
73	40		60		1.0
74	40			60	1.0
75	40	60			1.0
79	60			40	1.0
80	40	60			1.0
91	60		40		1.0
95		60	40		1.0
96	60			40	1.0
253	83			16	0.994512
255		83	16		0.994512
256	83		16		0.994512
257		16		83	0.994512
258		83		16	0.994512
260	83			16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain