SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene2747

Length: 468 nt

UniGene Fasta

>uagpf_v2_unigene2747
CGTCGTGACCTTGGCTGTCACTCAAAGTTGGAGTAAACAAGGGTGTCTCAGATAAGCAAATTCGGTTGAAAATATTTTCTCCAAATGTTCTTAATATAACTCTAGTGGACTTGCCTGGTATAACCAAGGTTCCAGTGGGTGACCAACCTTCTGATATTGAAGCCCGGATTAGAACAATGATTTTGTCATACATCAAGCATGAAACATGCATCATTCTAGCAGTTTCACCTGCAAATGCAGATTTGTCAAATTCTGATGCACTTCAGATGGCAAGAATTGCTGATCCTGATGGTCACCGAACTATAGGTGTGATTACAAAGCTGGATATTATGGACCGGGGAACTGATGCTGCTAATTTCCTTTGGGAAATGTAATTCCCCTACGCCTGGGTTATATTGGAGTTGTTAATCGCAGTCAAGCGGATATTAATGGGAACCTTCGCAGTGAGTGACAGGCCACTGAGACTGC

Ace file of the UniGene uagpf_v2_unigene2747

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1737	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	dynamin-related protein 3A [Arabidopsis thaliana] sp\|Q8S944.2\|DRP3A_ARATH RecName: Full=Dynamin-related protein 3A; AltName: Full=Dynamin-like protein 2; AltName: Full=Dynamin-like protein 2a emb\|CAA20578.1\| Arabidopsis dynamin-like protein ADL2 [Arabidop	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	48%
Blast2go	dynamin-related protein 3a-like	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Oxidoreductases, Acting on NADH or NADPH, With a quinone or similar compound as acceptor.	EC:1.6.5.-	-	0.0	83%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Polycyclic aromatic hydrocarbon degradation	00624		0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	83%
Blast2go	GTP catabolic process	GO:0006184	Biological Process	83%
Blast2go	GTP binding	GO:0005525	Molecular Function	83%
Blast2go	oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor	GO:0016655	Molecular Function	83%
Blast2go	GTPase activity	GO:0003924	Molecular Function	83%
Blast2go	plasma membrane	GO:0005886	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Dynamin central domain	IPR000375	-	-
Sma3	G-patch domain	IPR000467	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Dynamin, GTPase domain	IPR001401	-	-
Sma3	Dynamin GTPase effector	IPR003130	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Dynamin, GTPase region, conserved site	IPR019762	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLP8

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 343 aas, your sequence is shorter than subject: 124 - 608

Fln protein: S*PWLSLKVGVNKGVSDKQIRLKIFSPNVLNITLVDLPGITKVPVGDQPSDIEARIRTMILSYIKHETCIILAVSPANADLSNSDALQMARIADPDGHRTIGVITKLDIMDRGTDAANFLWEM*

Protein Length: 125

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGTTGGAGTAAACAAGGGTGTCTCAGATAAGCAAATTCGGTTGAAAATATTTTCTCCAAATGTTCTTAATATAACTCTAGTGGACTTGCCTGGTATAACCAAGGTTCCAGTGGGTGACCAACCTTCTGATATTGAAGCCCGGATTAGAACAATGATTTTGTCATACATCAAGCATGAAACATGCATCATTCTAGCAGTTTCACCTGCAAATGCAGATTTGTCAAATTCTGATGCACTTCAGATGGCAAGAATTGCTGATCCTGATGGTCACCGAACTATAGGTGTGATTACAAAGCTGGATATTATGGACCGGGGAACTGATGCTGCTAATTTCCTTTGGGAAATGTAATTCCCCTACGCCTGGGTTATATTGGAGTTGTTAATCGCAGTCAAGCGGATATTAATGGGAACCTTCGCAGTGAGTGACAGGCCACTGAGACTGC

Fln Alignment:

Contig2747___GVNKGVSDKQIRLKIFSPNVLNITLVDLPGITKVPVGDQPSDIEARIRTMILSYIKHETCIILAVSPANADLSNSDALQMARIADPDGHRTIGVITKLDIMDRGTDAANFL----WEM*FPYAWVI
B8LLP8_______________GRSKQVSSVPIHLSIYSPNVVNLTLIDLPGLTKVAIEGQAESVVADIENMVRSYIEKPNSIILAISPANQDLATSDAIKISREVDPKGERTFGVLTKVDLMDKGTNAVDILEGKAYRLQFPWVGVV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain