SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene2654

Length: 771 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene2654

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27282	10/11

Source	Descriptions	Term	Type	Identity
AutoFact	RNA helicase n=1 Tax=Vigna radiata var. radiata RepID=Q9M6R6_VIGRR	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	72%
Blast2go	dead-box atp-dependent rna helicase 7-like	-	-	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	81%
Blast2go	nucleolus	GO:0005730	Cellular Component	0.0	81%

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	GUCT	IPR012562	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-

Full-Lengther Next Prediction

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
155	40	60			1.0
156	40		60		1.0
159	33		66		1.0
164	33	66			1.0
176			33	66	1.0
177	33	66			1.0
178	66		33		1.0
229	90	10			0.90298
231	90	10			0.90298
233			90	10	0.90298
237	90	10			0.90298
241	90		10		0.90298
242	90	10			0.90298
244		90	10		0.90298
246		10	90		0.90298
248	90	10			0.90298
390		10	90		0.90298
393	87	12			0.992554
394	87		12		0.992554
395	87			12	0.992554
398	87	12			0.992554
399		12	87		0.992554
400	87			12	0.992554
402			12	87	0.992554
405	87		12		0.992554
409	87	12			0.992554
410			87	12	0.992554
411		12	87		0.992554
412	12			87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain