SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene2640

Length: 1667 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene2640

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3775	94/100
SustainPine v2.0	sp_v2.0_unigene77320	4/100

Source	Descriptions	Term	Type	Identity
AutoFact	Amine oxidase [Medicago truncatula]	-	-	47%
FL-Next	sp=Probable polyamine oxidase 5; Arabidopsis thaliana (Mouse-ear cress).	-	-	39%
Blast2go	probable polyamine oxidase 5-like	-	-	62%

Source	InterPros	Term	Type	e value	Identity
Sma3	Amine oxidase	IPR002937	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9SU79

Fln msg: your sequence is shorter than subject: 388 - 533

Fln protein: VVTLAVTQYARNGNAFTANRKLLEEGVFSIHESTERTYTSADSLLDLDFVVSLASWSFPGSRLQLLKGIRLF*SLWPAFCRPRRSNSERKWKKSSGQMRAKHTLNRPYTSTSKMVLLWMQTM*LLLCRWVF*RLERVKVPLKASLRLSFIPRFLPAR*MQFLSLVLVLVNKLFLEIDPLDEDSLYPSLNFIFSKFGNSQKSEETKHKVPWWMRKTISLCPIYRESHVLLAWFAGEEALELERLSEEEIIKGVSDTLASFGLTGGANVTDGKENGDGQVVGAEKINGVFRHVLRSQWGFDPLFRGSYSYVAVGSSGQDIDRLAEPLPKRATSQQNHCTPLIIHPLQLLFAGEATHRTHYSTTHGAHFSGLREANRLLQHYGWTNLEQL*

Protein Length: 389

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATATGCAAGAAATGGGAACGCATTCACTGCTAACCGGAAGCTGCTGGAAGAAGGTGTGTTTTCTATCCACGAAAGCACTGAACGGACTTACACGTCCGCAGATTCGCTGCTGGACCTGGACTTTGTCGTGAGCTTGGCTTCCTGGAGTTTCCCGGGGAGCAGATTACAATTGCTAAAGGGTATTCGACTGTTTTGAAGTCTTTGGCCAGCGTTTTGCCGGCCGAGACGATCCAATTCGGAAAGAAAGTGGAAAAAATCGAGTGGACAGATGCGGGCGAAACATACTCTGAATCGCCCGTACACATCCACTTCGAAGATGGTTCTGTTATGGATGCAGACCATGTGATTATTACTGTGTCGTTGGGTGTTTTAAAGGCTGGAACGGGTCAAGGTTCCATTAAAGGCAAGCCTCAGGCTTTCTTTCATCCCCCGCTTCCTTCCTGCAAGGTGAATGCAATTTCTAAGCTTGGTTTTGGTGTTGGTAAACAAATTATTTCTTGAAATAGATCCCTTAGATGAAGACAGTCTTTACCCCTCGCTCAATTTTATATTTAGTAAGTTTGGGAATTCACAGAAGAGTGAAGAGACGAAGCACAAGGTCCCATGGTGGATGAGGAAAACCATTTCCTTGTGCCCGATATACAGAGAGTCCCATGTTTTGCTGGCATGGTTCGCTGGAGAAGAAGCTCTGGAGCTTGAGCGTCTGTCTGAAGAAGAAATTATCAAAGGAGTTTCTGATACTCTTGCAAGCTTCGGTCTAACAGGAGGCGCCAATGTCACGGACGGCAAAGAAAATGGTGACGGTCAAGTAGTGGGAGCTGAGAAGATAAATGGAGTATTTCGACATGTATTGCGAAGCCAATGGGGATTCGATCCTCTGTTCCGAGGCTCATATAGTTACGTTGCAGTGGGTTCTAGCGGGCAAGACATTGATCGATTAGCAGAACCGCTCCCAAAGCGGGCAACTTCGCAACAAAACCATTGTACTCCCCTTATTATTCATCCATTGCAGCTTCTTTTTGCAGGTGAAGCCACGCACAGGACGCATTATTCGACAACCCATGGGGCTCATTTCAGCGGGCTAAGGGAGGCCAACAGGCTGCTTCAACACTATGGATGGACAAATCTGGAACAGCTATAA___ATTTGTTTTGTTTTATCATCCACATCCACACAACAACCATTAGCATTAGCATTTTCTAAGGGTAAATTGAACGTCTCACCCATTCTCTCTGTTCCTCCCAGGCATTGTGATGTCCATCTCTCGTTGGAGAAAGCAATACTATTTTCAAGAGCCATGTTGTTGTAAATATCTTTAGAAAAAGCCCGGTATTCTATACGATTACGGGAAAGTGTGGTAGTTGCGTCTTTTCTTCTATTCTAATCTGCTGGTCCAGTTTCTTTTCCCCCCGTTGTATCCGGGCTACTCCATGGACGGGTTCTTTCCTGCTACTAATCGGGTCGGGTCTTCTCCTTCGTTCGTTGGTTGATAATACAGTGGATTTTGTACCGAGTTTTTTCTTTCCTCTTGTTATTGAAGCATCAATTATTTCAGCCCCTTCGTTATTATATAAATTTTTGTCATGTACCTTCTTCTGTCCACATATTTTGGATCAATCAGAAAAGAACCTTGCGCTCTGACTAAC

Fln Alignment:

Contig2640___NRKLLEEGVFSIHESTERTYTXXXXXXXXXXXXXXXXWSFPGSRLQLLKG----IRLF*SLWP-AFCRPRRSNSERKWKKSSGQMRAKHTLNRPYTSTSKMVLLWMQTM*LLLCRWVF*RLERVKVPLKASLRLSFIPRFLPAR*MQFLSLVLVLVNKLFLEIDPLDEDSLYPSLNFIFSKFGNSQKSEETKHKVPWWMRKTISLCPIYRESHVLLAWFAGXXXXXXXXXXXXXIIKGVSDTLASFGLTG-------GANVTDGKENGDGQVVGAEKINGVFRHVLRSQWGFDPLFRXXXXXXXXXXXXQDIDRLAEPLPK--RATSQQNHCTPLIIHPLQLLFAGEATHRTHYSTTHGAHFSGLREANRLLQHY
Q9SU79_______________SRKSLEEAIFTMFSNTQRTYTSADELSTLDFAAESEYQMFPGEEITIAKGYLSVIHHLASVLPQGVIQLNRKVTKIEWQSNEVKL---HFSDGSVVFADHVI--------------VTVSLGVLKAGIETDAEL-FSPPLPDFKSDAIRRLGYGVVNKLFVEMS----QRKFPSLQLVFDR----EDSEFRFVKIPWWMRRTATITPIHSNSKVLLSWFAGKEALELEKLTDEEIKDAVMTTISC--LTGKEVKNDTAKPLTNGSLNDDDEAMKITK-------VLKSKWGSDPLFRGSYSYVAVGSSGDDLDAMAEPLPKINKKVGQVNGHDQAKVHELQVMFAGEATHRTHYSTTHGAYYSGLREANRLLKHY

SNPs (tot: 193)

Position	A %	C %	G %	T %	Probability
148		50		50	1.0
150	50			50	1.0
151	50	50			1.0
157		50	50		1.0
158	50	50			1.0
159	50			50	1.0
160	50			50	1.0
162	50		50		1.0
163	50	50			1.0
166	50			50	1.0
170			50	50	1.0
171		50	50		1.0
172	50		50		1.0
240		20		80	0.995493
241			20	80	0.995493
252		80		20	0.995493
254	80			20	0.995493
255		20	80		0.995493
262	20	80			0.995493
361		20	80		0.995493
362	80		20		0.995493
364		20	80		0.995493
365		80	20		0.995493
366	80			20	0.995493
376	80		20		0.995493
377		20		80	0.995493
379	80		20		0.995493
381		20		80	0.995493
386		20		80	0.995493
387	20		80		0.995493
390			80	20	0.995493
470			20	80	0.995493
475		80	20		0.995493
480	80	20			0.995493
481		20	80		0.995493
482			80	20	0.995493
485	80		20		0.995493
486	80	20			0.995493
492	80	20			0.995493
506		42	57		1.0
509		42		57	1.0
510			42	57	1.0
513	42		57		1.0
514		42		57	1.0
515		42	57		1.0
520		42		57	1.0
521	57			42	1.0
522	57		42		1.0
523	57			42	1.0
526	57	42			1.0
527	57			42	1.0
528		42		57	1.0
529	42			57	1.0
539	87	12			0.992554
540	87		12		0.992554
542	87	12			0.992554
544	87			12	0.992554
545			12	87	0.992554
546	12	87			0.992554
551	87		12		0.992554
553	87	12			0.992554
556	87	12			0.992554
558		12	87		0.992554
559	87			12	0.992554
789			11	88	0.923564
794		11		88	0.923564
797	88			11	0.923564
798	88		11		0.923564
800	88	11			0.923564
801			88	11	0.923564
803	88			11	0.923564
804		11	88		0.923564
805	11		88		0.923564
807			88	11	0.923564
817		87		12	0.992554
848	80	20			0.995493
852			80	20	0.995493
855		20	80		0.995493
858			80	20	0.995493
859	80		20		0.995493
861	80	20			0.995493
862	80			20	0.995493
866	80	20			0.995493
868	75	25			0.996473
870		25	75		0.996473
871	25		75		0.996473
881	80			20	0.995493
883	80		20		0.995493
886		20		80	0.995493
887	80	20			0.995493
893	71	14		14	0.984337
894	71	14		14	0.984337
896		71		28	1.0
897		85	14		0.993533
899	71	28			1.0
901		14	71	14	0.984337
902	14		85		0.993533
904		14	85		0.993533
905	85			14	0.993533
906			14	85	0.993533
909	14		85		0.993533
910	85	14			0.993533
913	12	75	12		0.975346
919	12			87	0.992554
922			87	12	0.992554
923	87			12	0.992554
929	87		12		0.992554
932		12		87	0.992554
934		12	87		0.992554
939	12		87		0.992554
994	87	12			0.992554
998			87	12	0.992554
1002	87	12			0.992554
1006		87	12		0.992554
1009	87			12	0.992554
1010	87		12		0.992554
1012	85			14	0.993533
1013	85	14			0.993533
1015	85	14			0.993533
1016		85		14	0.993533
1030			12	87	0.992554
1032	87	12			0.992554
1033			12	87	0.992554
1035	87		12		0.992554
1036	12			87	0.992554
1037		12		87	0.992554
1039	87			12	0.992554
1041		87	12		0.992554
1042		87	12		0.992554
1043	87	12			0.992554
1045			12	87	0.992554
1046			87	12	0.992554
1049			87	12	0.992554
1051	12			87	0.992554
1078			87	12	0.992554
1084	88		11		0.923564
1086			11	88	0.923564
1088		11		88	0.923564
1090		88		11	0.923564
1092	88		11		0.923564
1095	88			11	0.923564
1096		88	11		0.923564
1097		88		11	0.923564
1116			90	10	0.90298
1117		10	90		0.90298
1118	10		90		0.90298
1166		13	73		0.999956
1169	73	13		13	0.999956
1170		86	13		0.999973
1171	86		13		0.999973
1172		13	86		0.999973
1175	73		13		0.999956
1177	73	13	13		0.999956
1178	86		13		0.999973
1179	71	28			1.0
1181		14		85	0.999981
1208	75		25		1.0
1209		75		25	1.0
1210	75	25			1.0
1211	75		25		1.0
1212		75		25	1.0
1213	75		25		1.0
1220	75		25		1.0
1223	75		25		1.0
1225		25		75	1.0
1227			75	25	1.0
1235			12	88	1.0
1236	84	4		12	1.0
1237	88	12			1.0
1239			88	12	1.0
1243	88	12			1.0
1244	88	12			1.0
1249	88		12		1.0
1253		88	12		1.0
1259	12	88			1.0
1339		6		93	1.0
1346	93		6		1.0
1347	5			95	0.999992
1349		6		93	1.0
1352	94		5		0.999994
1354	94	5			0.999996
1355	94			5	0.999996
1356	94		5		0.999996
1357	94			5	0.999996
1358	94	5			0.999996
1359	5		94		0.999996
1361		94		5	0.999996
1363	3		94		0.951749
1364	1		94		0.951749
1588	80		20		0.995493
1592	25	25			0.995533
1594	20	80			0.995493
1600		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain