SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene2638

Length: 459 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene2638
CGTCGTGACCTTGGCTGTCACTCATGTTTTGTTGTTTTTTCCAATTTATCACTGTGGTCATGTTGACAATATTGATTTTGGGTCTTTTGGCAAAACTTCTCCCTGTGAGTTTTGGTTGCTTGTAGCTTGGAAAAATGGGAGTTTTGAGACTGAGGATTCCATTAGAGGGACAATGATGTGAGGTCTTTTTAGGAATGGGGATATGTGGCATCATCTGTATCAGATAATGGACTTAAAATCTGTGGCCTATCAGTTCAAGTGTGGTAAGGCCAAGCCTCCAATGCTTCCGAGGGCTCGATTACAGGTTTGGTTTGTACGAGTCAGTTCGAGCATACTGCTATGGACATGCATTGTTCAGTTGATGGCCCTGGGAGAGATTTGGCATCCTCGTCTGCCTGTGGGGTGGCCTACTTGTTCAATCGCCATGACTTCGCCGATCGCGTTCCCAACATCGTTCGC

Ace file of the UniGene uagpf_v2_unigene2638 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18790	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	O-fucosyltransferase family protein [Arabidopsis thaliana] gb\|AAQ89634.1\| At1g14020 [Arabidopsis thaliana] dbj\|BAF01665.1\| growth regulator like protein [Arabidopsis thaliana] dbj\|BAF01818.1\| growth regulator like protein [Arabidopsis thaliana] gb\|AEE2909	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	54%
Blast2go	duf246 domain-containing protein at1g04910-like	-	-	79%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein Hsp70	IPR001023	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3		IPR004348	-	-
Sma3	Putative harbinger transposase-derived nuclease	IPR006912	-	-
Sma3	Rhamnogalacturonate lyase	IPR010325	-	-
Sma3	Heat shock protein 70	IPR013126	-	-
Sma3		IPR015706	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	Heat shock protein 70, conserved site	IPR018181	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: D8RZI7

Fln msg: Distance to subject end: 410 aas, your sequence is shorter than subject: 85 - 486

Fln protein: MWHHLYQIMDLKSVAYQFKCGKAKPPMLPRARLQVWFVRVSSSILLWTCIVQLMALGEIWHPRLPVGWPTCSIAMTSPIAFPTSF

Protein Length: 86

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTTTTGTTGTTTTTTCCAATTTATCACTGTGGTCATGTTGACAATATTGATTTTGGGTCTTTTGGCAAAACTTCTCCCTGTGAGTTTTGGTTGCTTGTAGCTTGGAAAAATGGGAGTTTTGAGACTGAGGATTCCATTAGAGGGACAATGATGTGAGGTCTTTTTAGGAATGGGGAT_-_ATGTGGCATCATCTGTATCAGATAATGGACTTAAAATCTGTGGCCTATCAGTTCAAGTGTGGTAAGGCCAAGCCTCCAATGCTTCCGAGGGCTCGATTACAGGTTTGGTTTGTACGAGTCAGTTCGAGCATACTGCTATGGACATGCATTGTTCAGTTGATGGCCCTGGGAGAGATTTGGCATCCTCGTCTGCCTGTGGGGTGGCCTACTTGTTCAATCGCCATGACTTCGCCGATCGCGTTCCCAACATCGTTCGC

Fln Alignment:

Contig2638___LKSVAYQFKCGKAKPPMLPRARLQVWFVRVSSSILLWTCIVQLMALGEIWHPRLPVGWPTCS
D8RZI7_______________MRPPADHHKAGKLRFPMLPRSRINVWLLRASTSILLWTCIIQLTALGELWRPRLLGGRSSCN

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
190		33	66		1.0
296		66	33		1.0
347		83		16	0.994512
348	83		16		0.994512
350	83		16		0.994512
354		83	16		0.994512
359		16	83		0.994512
360		16	83		0.994512
364	83		16		0.994512
367		20		80	0.995493
368	20			80	0.995493
369		20		80	0.995493
371	20	80			0.995493
373	80		20		0.995493
387		83	16		0.994512
389	83		16		0.994512
392		16		83	0.994512
393	16			83	0.994512
395		16		83	0.994512
399		83	16		0.994512
400	83		16		0.994512
402		16	83		0.994512
405		83	16		0.994512
408	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain