SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene2616

Length: 1249 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene2616

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene714	42/44

Source	Descriptions	Term	Type	Identity
AutoFact	Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SLS6_PHYPA	-	-	80%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	81%
Blast2go	snare-like protein	-	-	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	ER to Golgi vesicle-mediated transport	GO:0006888	Biological Process	0.0	80%
Blast2go	cis-Golgi network	GO:0005801	Cellular Component	0.0	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Sybindin-like protein	IPR007233	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: A9SLS6

Fln msg: Overlapping hits, possible frame ERROR between 398 and 397,

Fln protein: MWHLLTILPNRMRCMYIFNRNGVCLYYKEWHRPLTTLSPQQDQKLMFGLLFSLKSFTAKMDPTSANKGNLGVPQLPGEGCSFHSFRTNTYKLNLMESPSxxIKMILITDPRMGDLREALKYIYNIYVEYVAKNPLYTPGQPFRCDLFNTTLDHYVRNLYVVTLACTLYSSFFSAVYHYLNI*

Protein Length: 183

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTTGCAACGGAGGAAAGAGCAGGCGTCGAGTCCATTCTCTAGGCAGCGAAAATGCAGTTTTTTGGAGGATCAG_-_ATGTGGCATCTGCTAACAATCTTACCCAATAGAATGAGGTGCATGTACATATTCAACAGGAACGGGGTCTGCCTTTATTACAAGGAATGGCATCGTCCTCTCACCACTCTCAGCCCTCAACAGGACCAGAAGCTCATGTTCGGACTTCTCTTCTCCCTCAAATCATTTACTGCCAAAATGGATCCTACCAGCGCCAATAAAGGAAACCTGGGAGTACCTCAACTACCTGGCGAAGGCTGCTCTTTTCATAGCTTCCGTACCAACACATACAAACTAAATTTAATGGAAAGTCCATCAxxxxxxATTAAGATGATCTTGATCACAGACCCAAGAATGGGGGATCTTCGGGAGGCTTTGAAATATATTTACAACATATATGTGGAGTATGTTGCCAAGAATCCCCTTTACACTCCAGGTCAACCATTTAGGTGTGACTTGTTCAACACGACACTTGACCATTATGTGAGGAACCTGTACGTCGTGACCTTGGCATGTACACTCTATTCATCTTTTTTTTCTGCAGTTTATCATTATCTAAATATTTGA___AGTGCTGTGGACAGTCATATCCTCATCAGGATTATAATATTCAAGTTTCAACACCTTGAATGTTTATTTGCTTTGGAATGTGTCTTCCTTTGTAGTCAGATGAGATACAGTACTTATCTTTATTTTTAGTCATCATCTGCAGTAGAGAGGGAGTTATCTTTAGTGTTGTGTATCTTTGTAAGGGATAGCTGTTGACAAATGTAAGGTACCCAAAGGAACACGTGAAAGTTACATTAAGCATTTTTTCCCCCACAAAAAAAGTGAGGTATATGTCATACCTTGTTGGAGTGTTGGATTAGATGTCTTGTTTGTTTAACAAGAGACTGCGGTTCCAAGTATAAAAGGATTTTCATTTTGTAGTGATTGCATCAGGGATTCTCTTGATGGAATATGATAGAGAGAAATCATGGGATGTTGAAAATCAGTGACCAGACTGTATGTGTAAAATTGGTGATCTAATGTTTGTAAGGAGAACATTTCTAAATTGTGCATCTCTTTTCCTGTCAAGATAATAGAATTGGAACTTATGCATTAAAGAGAGGGAAACGTGTCTTTAGTCAAAATAGATGGAGCCTTTAACAACAGAAAATTTCTTCATTGCTCTACG

Fln Alignment:

Contig2616___NRMRCMYIFNRNGVCLYYKEWHRPLTTLSPQQDQKLMFGLLFSLKSFTAKMDPTSANKGNLGVPQLPGEGCSFHSFRTNTYKLNLMESPSxIKMILITDPRMGDLREALKYIYN-IYVEYVAKNPLYTPGQPFRCDLFNTTLDHYVRNL
A9SLS6_______________SRMRCMYIFNRNGVCLHYHVWWRPHNTLSHQQDQKLMFGLLFSLKSFTAKMDPVGGNKGTLGMPSLPGQGCSFHSFRTNTYKLSFMESPSxIKLILITDPRMGDLRDALKFIYNNIYVEYVVKNPLYTPGLPFTCELFNATLDQYVKTL

SNPs (tot: 74)

Position	A %	C %	G %	T %	Probability
98	50	50			1.0
100	50			50	1.0
101		50		50	1.0
103		25		75	0.996473
105	50		50		1.0
107	50	50			1.0
109		50		50	1.0
110			50	50	1.0
114	50		50		1.0
115	50			50	1.0
118	50	50			1.0
119	50			50	1.0
198		75		25	0.996473
212	66	33			1.0
214		66		33	1.0
216		66	33		1.0
218		66	33		1.0
220	66	33			1.0
222	66			33	1.0
223			83	16	0.994512
225	66	16			0.988813
226		66	16	16	0.988813
227		83	16		0.994512
228	66			33	1.0
229		16	83		0.994512
230	83			16	0.994512
231	66	33			1.0
232	16		66	16	0.988813
236	83	16			0.994512
375			40	60	1.0
376	60			40	1.0
377	60	40			1.0
378	60		40		1.0
380			40	60	1.0
381	40			60	1.0
382	60	40			1.0
383	60	40			1.0
385			60	40	1.0
387	60		40		1.0
388	60	40			1.0
389	60			40	1.0
393	40	60			1.0
394	60	40			1.0
427		80		20	0.995493
429	80		20		0.995493
430	80			20	0.995493
434	80	20			0.995493
436			80	20	0.995493
439		20	80		0.995493
440			80	20	0.995493
441	80		20		0.995493
445	20			80	0.995493
448			80	20	0.995493
449		20	80		0.995493
622			66	33	1.0
646		10		90	0.90298
648	90			10	0.90298
649	90	10			0.90298
663	69	23		7	1.0
664			76	23	1.0
667		76	23		1.0
668	76	23			1.0
670	69	7	23		1.0
674	23			76	1.0
676	38		38		1.0
716		17		82	1.0
717	82		17		1.0
719			17	82	1.0
723		17		82	1.0
729	82	17			1.0
733		17	82		1.0
734	17			82	1.0
739	11	88			0.999952
1062		12	87		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain