SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene2584

Length: 487 nt

UniGene Fasta

>uagpf_v2_unigene2584
CCCCTTCTTGGAGGTCACGGCATAGCGTTTCTGTTGACCCCATTTAAGGGGTTGCAGGGAGCTTTGTCCAGCCCCTACCTTGGCCTGTTCAATGATTCCAGCAACGGGAAGGATTCTAATCATATATTTGCGGTGGAGTTGGATACAGTTCGGGATTTTGAGTTTGATGATATTGACGATAACCATGTGGGCATAGATATCAACAGCCTGACATCGATTAGGGCCGCAACAGCTGGGTACAGGATTGGTAATGGAGCTGTTCAGGAATTTGATCTTAAATCTCAGAAGAGCATTCAGTGCTGGATAGATTTTGATGGTGCAGAGAATAGGCTTAATGTGAGTGTTGTACCAGGGGGGATGCCGAAGCCTGATCGTCCATTGATATCTGTTCATGTTAAGCTCTCGGATGTCCTCCTTGATAATATGTATGTGGGGTTTTCAGCATCCACAGGGCTGCTTTCTAGTGCTCATCGTGTTCTGGGATGGA

Ace file of the UniGene uagpf_v2_unigene2584

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene33491	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	lectin-like receptor kinase 7;1 [Medicago truncatula]	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	50%
Blast2go	l-type lectin-domain containing receptor kinase -like	-	-	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	68%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3		IPR001899	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Actin-like	IPR004000	-	-
Sma3	RNA polymerase Rpb7, N-terminal	IPR005576	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3		IPR015706	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLJ6

Fln msg: Distance to subject end: 440 aas, your sequence is shorter than subject: 162 - 704

Fln protein: PLLGGHGIAFLLTPFKGLQGALSSPYLGLFNDSSNGKDSNHIFAVELDTVRDFEFDDIDDNHVGIDINSLTSIRAATAGYRIGNGAVQEFDLKSQKSIQCWIDFDGAENRLNVSVVPGGMPKPDRPLISVHVKLSDVLLDNMYVGFSASTGLLSSAHRVLGW

Protein Length: 163

Fln nts: CCCCTTCTTGGAGGTCACGGCATAGCGTTTCTGTTGACCCCATTTAAGGGGTTGCAGGGAGCTTTGTCCAGCCCCTACCTTGGCCTGTTCAATGATTCCAGCAACGGGAAGGATTCTAATCATATATTTGCGGTGGAGTTGGATACAGTTCGGGATTTTGAGTTTGATGATATTGACGATAACCATGTGGGCATAGATATCAACAGCCTGACATCGATTAGGGCCGCAACAGCTGGGTACAGGATTGGTAATGGAGCTGTTCAGGAATTTGATCTTAAATCTCAGAAGAGCATTCAGTGCTGGATAGATTTTGATGGTGCAGAGAATAGGCTTAATGTGAGTGTTGTACCAGGGGGGATGCCGAAGCCTGATCGTCCATTGATATCTGTTCATGTTAAGCTCTCGGATGTCCTCCTTGATAATATGTATGTGGGGTTTTCAGCATCCACAGGGCTGCTTTCTAGTGCTCATCGTGTTCTGGGATGGA

Fln Alignment:

Contig2584___GGHGIAFLLTPFKGLQGALSSPYLGLFNDSSNGKDSNHIFAVELDTVRDFEFDDIDDNHVGIDINSLTSIRAATAGYRIGNGAVQEFDLKSQKSIQCWIDFDGAENRLNVSVVPGGMPKPDRPLISVHVKLSDVLLDNMYVGFSASTGLLSSAHRVLGW
B8LLJ6_______________GGHGLAFVMTPYTSSMGALPAQHLGLLNLTSNGQPYNHLFAVEFDTTKNVEFNDPDGNHVGVDINNLVSVETITAGYWNGE-EFHNLSLKSGRNIQAWIDYDHLQTRLNVCITVAGLPRPRRPLISLKIDLHSVLQEKMFVGFSAATGNFIEDHYVLAW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain