SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene2578

Length: 1118 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene2578

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5608	34/36

Source	Descriptions	Term	Type	Identity
AutoFact	ATP-binding cassette transporter, subfamily G, member 4, group WBC protein PpABCG4 n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SCA8_PHYPA	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	61%
Blast2go	abc transporter g family member 22-like	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	ATPase activity, coupled to transmembrane movement of substances	GO:0042626	Molecular Function	73%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	73%
Blast2go	plasma membrane	GO:0005886	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNF9

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 222 - 819

Fln protein: S*PWLSLIFMAMFWGYFPLFTAIFAFPQEKAILAKERRSDMYCLSAYFLALTLGDLPLDLILNAVFMVIVYLMAHLRMSVGIFLLTILASFLDVVTSQGLGLAIGAATMDLKKGTTLASVVVLAFMISGGYFVQHIPVFMSWIRYCSFQYYTFKLLMKVQYSDDQPYDCVGPGRCRSLASSPAIRGTNLGGGGSEVLALLIMIVGYRIIAYIALRRMKLAV*

Protein Length: 223

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTTCATGGCCATGTTTTGGGGGTATTTTCCTCTTTTCACAGCAATCTTCGCATTTCCTCAGGAGAAGGCCATTCTGGCAAAAGAACGTAGATCTGATATGTACTGTTTGAGTGCTTACTTCTTGGCTCTCACGTTGGGTGATCTCCCTCTTGACCTCATCCTGAACGCCGTTTTCATGGTGATTGTCTACCTGATGGCTCATCTGCGGATGTCAGTGGGCATATTCTTGTTAACAATACTTGCCAGCTTCTTAGACGTGGTCACTTCGCAGGGCCTTGGCCTAGCAATTGGAGCAGCCACGATGGATTTGAAGAAAGGAACCACGCTAGCTTCTGTTGTAGTTCTGGCTTTCATGATCAGTGGTGGCTATTTTGTGCAGCACATCCCGGTTTTCATGAGCTGGATCAGATATTGCTCGTTTCAGTATTATACATTCAAATTGCTCATGAAAGTTCAATACAGCGACGACCAGCCCTATGACTGCGTCGGCCCCGGTAGGTGCAGATCCCTGGCGTCCTCCCCGGCTATTCGTGGCACAAATCTCGGAGGAGGTGGTTCGGAGGTATTGGCATTGCTGATAATGATAGTGGGCTATAGAATTATCGCCTACATTGCCCTTCGGAGAATGAAATTAGCAGTCTGA___TGAAGCTAAAAACATTGTGGACAGTTGAAAGTACACAAGATTTGCTCGTAGGTTTATTCCTATTTTGGATGATATGGAACTGATATGAAATTCTAGGTCGCCAGGGCGTGGTTGAACTGTTAAGTGAGTAGATTTAGTTGTCCAATCCATAAGAATATACACACCTAAGCTCCAAACATGATCACTCATCTCACCATTTCATCAAAAACCTGGTAATTTCCATGAAGATCAAAGATTCCAGGGAAAATATGCTGGTTTACTAATGGAGATTGACAAGTTTGCACAAACATTAAGTTCTGCCGTATGTATTGTTGTCCCATGACCAGAGATGACACACTTGATTGCTGGAGTTTTGCATACAGTATTTATGGTAGCCATACATTTTGTAACCGGCCACAGATTTGTAATAGTTGCATATGTTGCAATATACCTCATAAAAATGTGAAGCTA

Fln Alignment:

Contig2578___LIFMAMFWGYFPLFTAIFAFPQEKAILAKERRSDMYCLSAYFXXXXXXXXXXXXXXNAVFMVIVYLMAHLRMSVGIFLLTILASFLDVVTSQGLGLAIGAATMDLKKGTTLASVVVLAFMISGGYFVQHIPVFMSWIRYCSFQYYTFKLLMKVQYSDDQPYDCVGPGRCRSLASSPAIRGTNLGGGGSEVLALLIMIVGYRIIAYIALRRMKLAV
B8LNF9_______________IFFIAVFWGFFPVFTAIFTFPQERAMLSKERAVDMYRLSAYFMARILSDLPLDLFLPIGFLLIVYFMAHLRMTVTAFLLTMLTTFLSIVASQGLGLAIGAAFMDLKKATTLASVTMMAFMLAGGFFVQRVHPFIKWIRYLSFNYYTYKILLKIQYDADQLYDCSSPSGCKSIATSSSLRGIPLDGGIKEATVMLIMVFGYRLLAYFSLLRMKLRV

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
173		80	20		0.995493
176			20	80	0.995493
184	80			20	0.995493
185			20	80	0.995493
186		80	20		0.995493
190	80	20			0.995493
194		80		20	0.995493
196	20		80		0.995493
261	87	12			0.992554
262	87			12	0.992554
264	87		12		0.992554
265		87	12		0.992554
266		12		87	0.992554
269		87		12	0.992554
272			87	12	0.992554
712			16	83	0.994512
720		38	61		1.0
721	15		61	23	1.0
723			23	76	1.0
724			23	76	1.0
725	76	23			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain