SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene2553

Length: 883 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene uagpf_v2_unigene2553 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2869	2/7
SustainPine v2.0	sp_v2.0_unigene19498	4/7

Source	Descriptions	Term	Type	Identity
AutoFact	putative 5-3 exoribonuclease [Oryza sativa Japonica Group]	-	-	69%
FL-Next	sp=5'-3' exoribonuclease 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	78%
Blast2go	5 -3 exoribonuclease 3-like	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	miRNA catabolic process	GO:0010587	Biological Process	89%
Blast2go	binding	GO:0005488	Molecular Function	89%
Blast2go	5'-3' exoribonuclease activity	GO:0004534	Molecular Function	89%
Blast2go	nucleus	GO:0005634	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Putative 5-3 exonuclease	IPR004859	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	5'-3' exoribonuclease 2	IPR017151	-	-

Full-Lengther Next Prediction

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
447		40		60	1.0
450	60	40			1.0
452			60	40	1.0
459	60		40		1.0
465	60		40		1.0
471	40		60		1.0
474		50		50	1.0
478	50			50	1.0
480			50	50	1.0
498	50		50		1.0
516	33	66			0.997452
528	66		33		0.997452
552		33	66		0.997452
560	66		33		0.997452
568	66			33	0.997452
575	33			66	0.997452
576	33		66		0.997452
588			50	50	1.0
591		50		50	1.0
612	75	25			0.996473
624		50		50	1.0
651	66		33		0.997452
661		66		33	0.997452
662	66	33			0.997452
674		33		66	0.997452
690		66	33		0.997452
695	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain