SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene2541

Length: 527 nt

UniGene Fasta

>uagpf_v2_unigene2541
CGTCGTGACCTTGGCTGTCACTCAATGGAGGGATTAAAGGAGTGGCTGGAAGCACTTTATACGGCTGGTGTGCCATGTGCAGTTGCGTCGTCCTTGGGTCGCTCCAATCTACTTGCAGCTCTTCAAAGAATGGGACTTCGAAAATATTTTCAGGCTATAGTGTCAGACGAAGATGGAATGGAGTCAATTGCACAAAGATTTCTTTCCGCTGCTGTAAAGTTAGATCGACCACCATCCAAATGTGTTGTTTTTGTAAGACGATCCTAGAGGCATCACAGCTGCACACAACTGCACAATGATGGCAGTTGCTTTGATTGGTTCTCATCCTGCGTAAGAAACTTTTTCATTGATTTAACCTTCCTCTTTCATTAACAGTCTGAAGAAATAGGGCTTTTAATTTACATATTCAATGTTAGTTATAAACTTATACATTCCAAGGATTTAGTGTAATGCATGTTCTGTTGCTCCAAATTAGACCGCCTCTTCATCATGTATCTTCCTTATGTTTCTGTAGATGGTATTAGAAA

Ace file of the UniGene uagpf_v2_unigene2541

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8678	2/4
SustainPine v2.0	sp_v2.0_unigene31642	2/4

Source	Descriptions	Term	Type	Identity
AutoFact	2-deoxyglucose-6-phosphate phosphatase, putative n=1 Tax=Ricinus communis RepID=B9S4C2_RICCO	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	haloacid dehalogenase-like hydrolase	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	79%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	79%
Blast2go	chloroplast	GO:0009507	Cellular Component	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVF8

Fln msg: Overlapping hits, possible frame ERROR between 291 and 257, query STOP codon too far from subject stop. Distance to subject end: 54 aas, putative chimeric sequence, your sequence is shorter than subject: 112 - 360

Fln protein: RRDLGCHSMEGLKEWLEALYTAGVPCAVASSLGRSNLLAALQRMGLRKYFQAIVSDEDGMESIAQRFLSAAVKLDRPPSKCVVFVxxxxxxxxxxxxxTMMAVALIGSHPA*

Protein Length: 113

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGGAGGGATTAAAGGAGTGGCTGGAAGCACTTTATACGGCTGGTGTGCCATGTGCAGTTGCGTCGTCCTTGGGTCGCTCCAATCTACTTGCAGCTCTTCAAAGAATGGGACTTCGAAAATATTTTCAGGCTATAGTGTCAGACGAAGATGGAATGGAGTCAATTGCACAAAGATTTCTTTCCGCTGCTGTAAAGTTAGATCGACCACCATCCAAATGTGTTGTTTTTGTAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxACAATGATGGCAGTTGCTTTGATTGGTTCTCATCCTGCGTAAGAAACTTTTTCATTGATTTAACCTTCCTCTTTCATTAACAGTCTGAAGAAATAGGGCTTTTAATTTACATATTCAATGTTAGTTATAAACTTATACATTCCAAGGATTTAGTGTAATGCATGTTCTGTTGCTCCAAATTAGACCGCCTCTTCATCATGTATCTTCCTTATGTTTCTGTAGATGGTATTAGAAA

Fln Alignment:

Contig2541___MEGLKEWLEALYTAGVPCAVASSLGRSNLLAALQRMGLRKYFQAIVSDEDGMESIAQRFLSAAVKLDRPPSKCVVF-xxxxxxxxxxxxxxxAVALIGSHPA*E
A9NVF8_______________MDGLKEWLEALYTAGVPCAVASSLDRQNLLAALQRMGLRKYFQAIVSDEDGMESIAQRFLSAAVKLDRPPSKCVVFExxxxxxxxxxxxxxxAVALIGSHPAYE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain