SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene2507

Length: 1697 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene2507

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7633	59/65

Source	Descriptions	Term	Type	Identity
AutoFact	glucan endo-1,3-beta-glucosidase 11 [Arabidopsis thaliana] sp\|Q8L868.1\|E1311_ARATH RecName: Full=Glucan endo-1,3-beta-glucosidase 11; AltName: Full=(1->3)-beta-glucan endohydrolase 11; Short=(1->3)-beta-glucanase 11; AltName: Full=Beta-1,3-endoglucanase 1	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	protein	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Glycosylases, Glycosidases, i.e. enzymes hydrolyzing O- and S-glycosyl compounds.	EC:3.2.1.-	-	0.0	73%

Source	KEGGs	Term	Identity
Blast2go	Ascorbate and aldarate metabolism	00053	73%
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	73%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	73%
Blast2go	Glycosaminoglycan degradation	00531	73%
Blast2go	Metabolic pathways	01100	73%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	73%
Blast2go	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	73%
Blast2go	cation binding	GO:0043169	Molecular Function	73%
Blast2go	cytoplasm	GO:0005737	Cellular Component	73%
Blast2go	anchored to plasma membrane	GO:0046658	Cellular Component	73%
Blast2go	nucleus	GO:0005634	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 17	IPR000490	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	TonB box, conserved site	IPR010916	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQK4

Fln msg: your sequence is shorter than subject: 433 - 451

Fln protein: MGFRWAFILLLSVASIQSTEGFSVTGTVGINYGQIANNLPSPSEVVELLQASNLTNVRIYDANPQILNALRNTSVEIVVSLGNEYVATMSARPDKARQWVKKNVAAYIPAGTNITGVLVGNEVYAGNDTVLKQNLMGALKNIHSALVSLGLDNTVKVSTAHSFDVFVSSFPPSSCAFSDKSVTYMKQLLDFLSATHAPFLVNVYPYFAYKGDPSNVPLDYALFRPSNGVVDSKTNLHYDNLFYAQIDAAYSALAALGYGKVEVRVSETGWPSKGDDDEVGATPENAKTYNGNLLERLHKKEGTPLKPNVSVQAFIFALFNENLKTGPTSERNYGLFKPDGTETYDLGLKGLKRIVSSLPPPPTVATGNISNSTPTTAITSTTAPSPSVSTGDSTNSTSDSSSAKGMRSLVFISFYLQILALSSFISVLILEH*

Protein Length: 434

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGAGGCCAACGTCGTGACCTTGGCTGTCACTCAGGGC_-_ATGGGATTTCGCTGGGCATTCATTCTGCTGCTCTCAGTTGCTTCAATACAGAGCACTGAAGGGTTCAGTGTCACGGGAACTGTAGGAATAAACTACGGGCAAATAGCGAACAACCTGCCATCCCCGTCCGAGGTCGTGGAGTTGCTGCAGGCTTCCAATCTGACAAATGTCCGGATCTACGACGCAAATCCACAGATTCTCAACGCGCTCCGCAACACCAGCGTGGAGATCGTGGTCAGCCTCGGCAACGAATATGTAGCCACGATGAGCGCCCGCCCGGACAAGGCCCGGCAGTGGGTGAAAAAGAACGTGGCAGCCTACATTCCCGCGGGGACTAACATCACGGGCGTCCTTGTGGGCAACGAGGTCTACGCGGGCAACGATACGGTACTGAAACAGAATCTGATGGGTGCTCTGAAGAACATACACTCGGCCCTGGTGAGCCTCGGCCTCGACAACACCGTTAAGGTCTCCACGGCGCACTCTTTCGACGTCTTCGTATCCTCCTTCCCGCCTTCCAGTTGCGCCTTCAGCGACAAATCCGTGACTTACATGAAGCAGCTCTTGGACTTTCTTTCCGCAACGCACGCGCCTTTTCTGGTCAATGTGTACCCCTATTTTGCCTACAAGGGCGACCCGAGCAACGTCCCTCTGGACTACGCTCTCTTCCGGCCCAGCAATGGCGTGGTCGATTCCAAGACCAATTTGCACTACGACAACCTGTTCTACGCCCAGATCGACGCTGCGTACTCGGCGCTCGCCGCTCTGGGCTACGGTAAGGTCGAGGTCAGGGTCTCGGAGACAGGGTGGCCCTCCAAGGGGGACGATGATGAGGTCGGTGCCACGCCCGAGAATGCAAAGACTTACAATGGGAACCTTCTGGAGAGGCTCCACAAGAAGGAGGGTACTCCCCTGAAGCCCAATGTGAGCGTGCAGGCCTTCATTTTTGCGCTCTTTAATGAGAATTTGAAGACCGGGCCTACATCCGAGAGAAATTATGGGCTCTTTAAACCAGACGGAACCGAGACGTATGACCTTGGCTTGAAAGGATTGAAGCGAATAGTGTCCTCTCTGCCTCCGCCCCCCACTGTTGCCACAGGCAACATCAGTAATTCCACCCCAACTACAGCTATCACCTCCACTACCGCTCCCAGCCCCTCTGTGTCCACAGGTGACAGTACTAATTCCACTTCAGACAGCTCCTCAGCTAAGGGAATGCGTTCACTGGTCTTCATTTCCTTCTACCTCCAGATTTTAGCTCTCTCTTCTTTTATCAGTGTTCTGATTTTGGAACATTAG___CAAACAAAATTGATTATTCTTTCACTGGAATATCTACTTATATATTAGAGTAGAAAACAACCACAATCTTCTCCTCTCAACTCGGTGCCAGATTGAGTCTAATCCAATCAGGAAGTTCCTGCTTGTATTAAAACAAGATTACGTGAGTCTTGCTATACAACGCACATGTTACGGACAAATACTCTTGAGAATTAATCTTTGTAATGCTGGCCTGGGTCTGTATATGAATCTGGAAGTTCATGGTGCTCTTTCTTATTGTGTCTTGCTATCATCTTAGAGCATTAATCAAGTTTGTAGGCATACTCTTGAATTAATTTTTGACATCTATTTTTTTTAGT

Fln Alignment:

Contig2507___GMGFRWAFILLLSVASIQSTEGFSVTGTVGINYGQIANNLPSPSEVVELLQASNLTNVRIYDANPQILNALRNTSVEIVVSLGNEYVATMSARPDKARQWVKKNVAAYIPAGTNITGVLVGNEVYAGNDTVLKQNLMGALKNIHSALVSLGLDNTVKVSTAHXXXXXXXXXXXXXXXXXXKSVTYMKQLLDFLSATHAPFLVNVYPYFAYKGDPSNVPLDYALFRPSNGVVDSKTNLHYDNLFYAQIDXXXXXXXXXXXXKVEVRVSETGWPSKGDDDEVGATPENAKTYNGNLLERLHKKEGTPLKPNVSVQAFIFALFNENLKTGPTSERNYGLFKPDGTETYDLGLKGLKRIVSSLPPPPTVATG---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKGMRSLVFISFYLQILALSSFISVLILEH
B8LQK4_______________GMTFRWAFILLLSVSSLQSTESLSVTGTVGINYGQIANNLPSPSEVVELLQSSNLTNVRIYDANPAILNALRNTSVEIVVSLGNEYVATMSARSDKARQWVKKNVAAYIPAGTNITGVLVGNEVYSGNDTVLKENLMGALKNIHSALVSLGLDKSVKVSTAHSFEVFGSSFPPSSCVFSDKTVAYMKQLLDFLSATHATFLVNVYPYFAYKGDTTNVPLNYALFRPSDGVVDSKNNLHYDNLFYAQIDAAYAALAALGYGKVEVRVSETGWPSKGDDDEVGATPDNAKTYNGNLLERLRKKEGTPLQPNVSVQAFIFALFNENMKPGPTSERNYGLFKPDGTETYDLGLKGLKRIVSSLSPPPSVSTGNGSKSTPTTTITPPSTTTPTMATDASTNSTNSSSDSSSAKGMHSLVFVSFYLQVLALSSLVSVVILEH

SNPs (tot: 99)

Position	A %	C %	G %	T %	Probability
34	33		66		0.997452
35			33	66	0.997452
38	33			66	0.997452
41		66	33		0.997452
47	33	66			0.997452
49			66	33	0.997452
51		66	33		0.997452
53		66	33		0.997452
54	33			66	0.997452
55	33	66			0.997452
56	66		33		0.997452
531		66	33		0.997452
532	33			66	0.997452
535	66			33	0.997452
536		66		33	0.997452
578		75		25	0.996473
580			25	75	0.996473
582		75	25		0.996473
583	25	75			0.996473
584	75	25			0.996473
585		25	75		0.996473
592		85		14	0.993533
593			28	71	1.0
598		85		14	0.993533
599			85	14	0.993533
600	85	14			0.993533
601	14	85			0.993533
602	85			14	0.993533
603	85			14	0.993533
604	85		14		0.993533
605			14	85	0.993533
607		85		14	0.993533
610		14	85		0.993533
614		14		85	0.993533
665			83	16	0.994512
707	83		16		0.999991
708	83			16	0.999991
712	16	83			0.999991
723	83			16	0.999991
725	16		83		0.999991
733		83		16	0.999991
946		11	88		0.923564
948	88			11	0.923564
952		11	88		0.923564
955		88		11	0.923564
956		88	11		0.923564
957	88		11		0.923564
959	88			11	0.923564
960	88		11		0.923564
961			88	11	0.923564
962	88	11			0.923564
964		11	88		0.923564
965			88	11	0.923564
966	88	11			0.923564
967	11		88		0.923564
986	76		15	7	0.999983
987	76			23	1.0
988		15	7	76	0.999983
993		23	76		1.0
995		7	76	15	0.999983
999	84			15	0.999986
1001			84	15	0.999986
1003	15	84			0.999986
1004		15		84	0.999986
1072		12		87	0.992554
1073	87		12		0.992554
1074	87	12			0.992554
1107		12		87	0.992554
1109	87			12	0.992554
1110	87		12		0.992554
1112		12	87		0.992554
1113		12	87		0.992554
1114	85			14	0.993533
1116		12	12	75	0.975346
1118	75	12		12	0.975346
1119	75	12		12	0.975346
1121		75		25	1.0
1122		12	87		0.992554
1124	75	25			1.0
1126	75	12		12	0.975346
1127	12		87		0.992554
1133	12			87	0.992554
1154		13	80	6	0.999961
1155			13	86	0.999973
1158	13	86			0.999973
1160	80	13		6	0.999961
1161		86		13	0.999973
1162	86			13	0.999973
1166	86		13		0.999973
1167	86			13	0.999973
1273			9	90	1.0
1274	90			9	1.0
1275	90	9			1.0
1277			90	9	1.0
1280	90	9			1.0
1284			90	9	1.0
1285			9	90	1.0
1291		6	93		0.999264
1292	6		93		0.999264

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain