SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene2443

Length: 1009 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene2443

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8054	39/45

Source	Descriptions	Term	Type	Identity
AutoFact	putative serine/threonine protein kinase [Arabidopsis thaliana] gb\|AAK25900.1\|AF360190_1 putative kinase [Arabidopsis thaliana] gb\|AAK64081.1\| putative kinase [Arabidopsis thaliana] gb\|AEE84141.1\| putative serine/threonine protein kinase [Arabidopsis thal	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	61%
Blast2go	cyclin-dependent kinase f-4-like	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	[RNA-polymerase]-subunit kinase.	EC:2.7.11.23	-	0.0	77%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	77%
Blast2go	RNA polymerase II carboxy-terminal domain kinase activity	GO:0008353	Molecular Function	77%
Blast2go	ATP binding	GO:0005524	Molecular Function	77%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LR77

Fln msg: Overlapping hits, possible frame ERROR between 330 and 26, your sequence is shorter than subject: 195 - 468

Fln protein: RRDLGCHSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxPIVARNSVGFTSKPVYTSDRQMERQVSGRPPGTSTRANVKAGTWRSQPEVLGSSNRAAQHSGVLATGHSRFDKHVNTGYHRRQ*

Protein Length: 196

Fln nts: CGTCGTGACCTTGGCTGTCACTCAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCCAATTGTGGCTCGAAATTCTGTGGGCTTCACCAGCAAACCTGTTTATACCTCTGATAGGCAAATGGAAAGACAGGTTTCAGGGCGTCCACCTGGCACGTCAACCAGAGCCAACGTAAAGGCAGGTACTTGGCGAAGCCAGCCTGAGGTGTTAGGATCATCTAACAGAGCTGCACAGCACTCGGGGGTTCTTGCCACTGGACATAGTCGTTTTGACAAGCATGTGAATACTGGCTATCATCGAAGGCAATGAATATTTGGTTATGGTTGAAGGATTAAGAACCAGTAAATTACATGGTGCCTATGATGTTTTCAAACAATAGTTAGACTTGTAATAAGCATAACAGTGCATCTGATAGCATATAGTGTTGTCTTGAATAATATGGTCTACGTAATTAACAATGGTTGTTTTTGTTTGAGCTTGACAGTGGTCTGTAGAATATATTATATAATTAAGGCCCTTGTAAGTTTTGGGGAGCTCAAATAGAAAGAAAGGTCCCTTAACTGAATGAAGGGACACGCCATGGTCCCGTGTTTTATAGAAGTGAAGCCTTGGCTATAGTTATATTGGCTAAGTTGGCAAATTATATACTCAGTTCGGATAATTGCATAACAATTGAAGTTCTATGTTTTTAATGGGGCCATTAATTTCCAGCAGAATTTTAGTGAAGATTGTACC

Fln Alignment:

Contig2443___CHSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKILEGPPIVARNSVGFTSKPVYTSDRQMERQVSGRPPGTSTRANVKAGTWRSQPEVLGSSNRAAQHSGVLATGHSRFDKHVNTGYHRR
B8LR77_______________CVYxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKNVEGPPLVDGNSVGFISKDVCASDRQIERQVSGRPPGTSTRVNVKAGTWRSQPEVLGSSNRAPQHSGVFATGHSRFDKHVNTGYYRR

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
324			16	83	0.994512
325	33		16		1.0
328			16	83	0.994512
329			83	16	0.994512
330	66	16		16	0.988813
332		16	83		0.994512
333			83	16	0.994512
335	16	83			0.994512
339		83	16		0.994512
354	75	25			1.0
355			25	75	1.0
362	25		75		1.0
363		25	75		1.0
368	75		25		1.0
369		75	25		1.0
371	75			25	1.0
374	75			25	1.0
375	75	25			1.0
378		75		25	1.0
379		25		75	1.0
380	25		75		1.0
388		72	27		1.0
397	27		72		1.0
400	72	27			1.0
401	72			27	1.0
406	70			30	1.0
407	70		30		1.0
408	70			30	1.0
409		30	70		1.0
412	66	11		22	0.999999
413	11	22	66		0.999999
414	22		77		0.999999
523	15		84		0.999986
663	94	5			0.998744
665	94			5	0.998744
667			5	94	0.998744
670	5			94	0.998744
671	94	5			0.998744
672	94	5			0.998744
674	94			5	0.998744
675	94		5		0.998744
684		5	94		0.998744

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain