SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene2387

Length: 1238 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene2387

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7880	72/73

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[K] COG1813 Predicted transcription factor, homolog of eukaryotic MBF1	-	-	3.0e-19	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Blast2go	endothelial differentiation-related factor 1	-	-	0.0	91%

Source	GOs	Term	Type	e value	Identity
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	0.0	91%

Source	InterPros	Term	Type	e value	Identity
Sma3	Helix-turn-helix type 3	IPR001387	-	0.0	-
Sma3	Multiprotein bridging factor 1, N-terminal	IPR013729	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 100)

Position	A %	C %	G %	T %	Probability
37			75	25	0.996473
40		25	75		0.996473
41	50	25	25		0.995533
42	50			50	1.0
45	25	25	50		0.995533
46	25	25	50		0.995533
49		75		25	0.996473
53	75		25		0.996473
54	75	25			0.996473
55	75			25	0.996473
57			75	25	0.996473
58		25	75		0.996473
60	75	25			0.996473
123			20	80	0.995493
125		20		80	0.995493
126		80	20		0.995493
127		80		20	0.995493
130	80	20			0.995493
131	80			20	0.995493
132			80	20	0.995493
133		80	20		0.995493
140	80			20	0.995493
141	80	20			0.995493
143	80	20			0.995493
144			80	20	0.995493
145		20	80		0.995493
191	55	33		11	1.0
193			55	44	1.0
194	66	33			1.0
195			33	66	1.0
196		11		88	0.923564
197		18	81		0.999994
198	36		63		1.0
199		81		18	0.999994
201	45		18	36	1.0
204	63		36		1.0
205	45	54			1.0
207	45		36	18	1.0
208			18	81	0.999994
209		36	18	45	1.0
210	81	18			0.999994
211		36		63	1.0
212			63	36	1.0
213		81		18	0.999994
214	27	18		45	1.0
216	81	18			0.999994
218		18		81	0.999994
219	18			81	0.999994
429		82	11	5	0.999919
432		11	5	82	0.999919
435	87			12	0.999964
436	81	12	6		0.999943
440	82	5	11		0.999919
444	88			11	0.999952
445		11	88		0.999952
447	88	11			0.999952
517		10	89		0.999919
531	13	86			1.0
532		13		86	1.0
534	86			13	1.0
537	80		14		1.0
538	85	14			1.0
539	85			14	1.0
541	85			15	1.0
542		15	85		1.0
543	15			85	1.0
544		15		84	1.0
583	89	10			0.999919
585	89	10			0.999919
698		10	90		0.999898
699	85		10		0.999793
700	84			10	0.999846
701	84	10	5		0.999846
703			84	15	1.0
705	10			89	0.999919
713		9	90		0.999872
716	85			9	0.999726
717	90	9			0.999872
721		9	90		0.999872
722	9	90			0.999872
786		7		92	0.999602
788	92			7	0.999664
789		7		92	0.999664
790			7	92	0.999664
795		6	93		0.999364
798		89	10		1.0
799	86		3	3	0.995852
800		85	7	7	0.997433
802	85		3	10	1.0
803		89	10		1.0
804		88	3	7	0.998862
806	92			7	0.999602
807		92	7		0.999602
808	85		3	3	0.997433
809		92		7	0.999602
811	7			92	0.999602
815		7		92	0.999602
818			92	7	0.999602
830	93	6			0.999364
1173		80		20	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain