SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene2357

Length: 1121 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene2357

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1046	8/13
SustainPine v2.0	sp_v2.0_unigene34469	5/13

Source	Descriptions	Term	Type	Identity
AutoFact	NAD-dependent isocitrate dehydrogenase c;1 [Oryza sativa Japonica Group] gb\|EAY94550.1\| hypothetical protein OsI_16326 [Oryza sativa Indica Group] gb\|EAZ31100.1\| hypothetical protein OsJ_15196 [Oryza sativa Japonica Group]	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	protein	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	Isocitrate dehydrogenase (NAD(+)).	EC:1.1.1.41	-	0.0	91%

Source	KEGGs	Term	Identity
Blast2go	Citrate cycle (TCA cycle)	00020	91%
Blast2go	Biosynthesis of terpenoids and steroids	01062	91%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	91%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	91%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065	91%
Blast2go	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	91%
Blast2go	Biosynthesis of plant hormones	01070	91%
Blast2go	Metabolic pathways	01100	91%
Blast2go	Biosynthesis of secondary metabolites	01110	91%

Source	GOs	Term	Type	Identity
Blast2go	tricarboxylic acid cycle	GO:0006099	Biological Process	91%
Blast2go	NAD binding	GO:0051287	Molecular Function	91%
Blast2go	magnesium ion binding	GO:0000287	Molecular Function	91%
Blast2go	isocitrate dehydrogenase (NAD+) activity	GO:0004449	Molecular Function	91%
Blast2go	mitochondrion	GO:0005739	Cellular Component	91%

Source	InterPros	Term	Type	e value	Identity
Sma3	Isocitrate dehydrogenase NAD-dependent	IPR004434	-	0.0	-
Sma3	Isocitrate/isopropylmalate dehydrogenase	IPR001804	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPK1

Fln msg: Distance to subject end: 128 aas, your sequence is shorter than subject: 241 - 378

Fln protein: MATKIASRLLRSRMAAEPLKNECHRRGVTYMPRPGDGAPRAVTLIPGEGIGPLVTGAVVDVMKAMHAPVYFETYDMHSSMDRVPTEVIESIRRNKVCLKGGLPTPVGGGVSSLNLQMRKELDLFASLVHCSNLPGLPTRHDNVNIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKTVTAVHKANIMKLADGLFLESCREVATKYPGIKYNEIIVDNCCMQ

Protein Length: 242

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGGGACCTTTAGATTGTGCAGAAACTAGCTATCAAACTTGACATTCCAATAATTTGCTGCCGGATTTTGACCGAAAAAACCTGCCGAAAACGCTTTCAAAAAATCGCGTTATAGACAACTGCAATATAAATGGGAAAACAGGTATAAAAGACAAGTCAACAACGTATTCGCTTCACGGCCCACGGACAGGGAAACGTCATACTATTGCAGTACAGCGGGGTTCTTCTTTCCCTTCGAGGAAGGACGTCACGAAAGCCGGGTCTAGTTGATGGCCCTGCGTATTTCCAAAGCAGGGATTCGAGTTCGAATCCTCGGAAGTCGAACCTGCGATCTGTGATCCAAACACAAGGCGGGGCGATCCGATCGCAGGGGAC_-_ATGGCCACCAAGATAGCTTCACGCCTACTGAGATCGAGAATGGCAGCGGAACCATTGAAGAATGAGTGTCATCGTCGAGGCGTAACGTACATGCCTCGGCCCGGAGACGGAGCCCCGAGGGCGGTGACCCTGATACCGGGAGAGGGCATCGGGCCCCTGGTGACGGGAGCCGTTGTGGATGTCATGAAGGCCATGCACGCCCCTGTTTACTTCGAAACTTACGACATGCATTCCTCCATGGACAGAGTCCCCACAGAGGTCATTGAATCAATTAGGCGGAACAAGGTCTGTTTGAAGGGCGGCCTCCCCACCCCTGTGGGGGGAGGTGTCAGCTCCCTCAATCTCCAGATGAGGAAAGAATTGGATCTTTTCGCTTCCCTTGTTCACTGTTCAAATCTCCCCGGCCTCCCCACCAGGCACGATAATGTGAACATCGTCGTCATCAGAGAGAACACCGAGGGCGAGTACTCTGGTTTGGAACACGAGGTCGTTCCGGGCGTCGTCGAAAGTCTAAAGGTAATAACAAAGTTCTGCTCAGAGCGGATTGCCAAGTATGCATTTGAATATGCATATCTCAACAATAGGAAGACAGTGACAGCAGTGCACAAGGCCAATATCATGAAGCTTGCAGATGGATTATTCCTGGAATCCTGTCGTGAAGTTGCAACGAAATACCCAGGAATCAAGTATAATGAGATCATTGTTGATAACTGCTGCATGCAA

Fln Alignment:

Contig2357___RGVTYMPRPGDGAPRAVTLIPGEGIGPLVTGAVVDVMKAMHAPVYFETYDMHSSMDRVPTEVIESIRRNKVCLKGGLPTPVGGGVSSLNLQMRKELDLFASLVHCSNLPGLPTRHDNVNIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKTVTAVHKANIMKLADGLFLESCREVATKYPGIKYNEIIVDNCCMQ
B8LPK1_______________RSITYMPRPGDGSPRAVTLIPGDGIGPLVTGAVEQVMEAMHAPVYFETYEVSGKMDKVPAEVIDSIKKNKVCLKGGLATPVGGGVSSLNVQLRKELDLFASLVHCFNLPGLPTRHDNVDIVVIRENTEGEYAGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRRTVTAVHKANIMKLADGLFLESSREVAKKYPGIKYNEIIVDNCCMQ

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
177		66	33		0.997452
179	33	33		33	0.997753
180	33	33		33	0.997753
183		66	33		0.997452
185	66	33			0.997452
187	66			33	0.997452
188	66			33	0.997452
189		66	33		0.997452
191		33		66	0.997452
192	66			33	0.997452
193			33	66	0.997452
196	33		66		0.997452
199		33		66	0.997452
200	33	66			0.997452
225	80		20		0.995493
230		20		80	0.995493
231	80			20	0.995493
233			20	80	0.995493
236	80			20	0.995493
244			80	20	0.995493
245		20	80		0.995493
246	20		80		0.995493
438	90	10			0.90298
440	90			10	0.90298
441	90			10	0.90298
443		10	90		0.90298
748	75			25	0.996473
752		25		75	0.996473
753			75	25	0.996473
754	75			25	0.996473
757	75	25			0.996473
758	75			25	0.996473
759	75		25		0.996473
760			75	25	0.996473
761	75	25			0.996473
763		25		75	0.996473
766		25	75		0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain