SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene2344

Length: 819 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene2344

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17065	17/20

Source	Descriptions	Term	Type	Identity
AutoFact	LANC_like domain containing protein	-	-	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	g protein-coupled receptor-like protein	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	maintenance of seed dormancy	GO:0010231	Biological Process	76%
Blast2go	regulation of abscisic acid mediated signaling pathway	GO:0009787	Biological Process	76%
Blast2go	abscisic acid binding	GO:0010427	Molecular Function	76%
Blast2go	plasma membrane	GO:0005886	Cellular Component	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Lanthionine synthetase C-like	IPR007822	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 66)

Position	A %	C %	G %	T %	Probability
86		33		66	0.997452
88		33		66	0.997452
89	66		33		0.997452
92	66	33			0.997452
93	66			33	0.997452
94	66			33	0.997452
95	66		33		0.997452
97	66	33			0.997452
98	66			33	0.997452
101	66	33			0.997452
103		66	33		0.997452
105	66	33			0.997452
106	33			66	0.997452
112	75	25			0.996473
113	75		25		0.996473
117	75			25	0.996473
121	75	25			0.996473
122	75			25	0.996473
123	75			25	0.996473
129			25	75	0.996473
136		25	75		0.996473
174		20	80		0.995493
185		20		80	0.995493
186		20	80		0.995493
187			80	20	0.995493
191	80	20			0.995493
192			80	20	0.995493
193	80		20		0.995493
200	20	80			0.995493
260		71	28		1.0
264	71			28	1.0
269		33		66	1.0
271	66			33	1.0
272	66			33	1.0
277			33	66	1.0
283		40	60		1.0
284	40		60		1.0
351	85		14		0.993533
353		14	85		0.993533
356			14	14	0.984337
359	85	14			0.993533
360			85	14	0.993533
362			14	85	0.993533
365	85		14		0.993533
366		85		14	0.993533
369		14	85		0.993533
370		85		14	0.993533
433	85			14	0.993533
439	85	14			0.993533
445	85	14			0.993533
447	85		14		0.993533
450		14		85	0.993533
453	14			85	0.993533
458	76			7	0.999983
459		7		76	0.999983
554			11	88	0.923564
555		11		88	0.923564
566		12		87	0.992554
570	87		12		0.992554
591		85		14	0.993533
610	85			14	0.993533
614		14		85	0.993533
628	14		85		0.993533
641	14	85			0.993533
691		20	80		0.995493
702		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain