SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene2328

Length: 683 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene2328

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18656	19/19

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	-	-	6.99949e-42	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	short-chain dehydrogenase tic chloroplastic-like	-	-	0.0	80%

Source	InterPros	Term	Type	Identity
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

SNPs (tot: 47)

Position	A %	C %	G %	T %	Probability
168			20	80	0.995493
174		20	80		0.995493
177	80		20		0.995493
178		20		80	0.995493
179	80			20	0.995493
181	80			20	0.995493
184	80	20			0.995493
185	80			20	0.995493
187	20			80	0.995493
233	66		33		0.997452
235			33	66	0.997452
236		66		33	0.997452
237		66	33		0.997452
240	66	33			0.997452
241			66	33	0.997452
242			66	33	0.997452
247	66		33		0.997452
268	50		50		1.0
269		50		50	1.0
270		50		50	1.0
272		50		50	1.0
273	50		50		1.0
274	50			50	1.0
278		50		50	1.0
279	50		50		1.0
287	42	57			1.0
288	14		57	28	1.0
289		42	57		1.0
290	28		71		1.0
291	85			14	0.993533
293	14			85	0.993533
295	85	14			0.993533
296			85	14	0.993533
301	83	16			0.994512
302	71	14		14	0.984337
306	85		14		0.993533
307			14	85	0.993533
308		14		85	0.993533
311			14	85	0.993533
312	85		14		0.993533
314			85	14	0.993533
315	85		14		0.993533
317	85	14			0.993533
320	85			14	0.993533
321	85	14			0.993533
322	14			85	0.993533
345	14	85			0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain