SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene2304

Length: 999 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene2304

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2913	12/12

Source	Descriptions	Term	Type	Identity
AutoFact	transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb\|ACI46510.1\| At5g11240 [Arabidopsis thaliana] gb\|AED91651.1\| transducin/WD40 domain-containing protein [Arabidopsis thaliana]	-	-	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	30%
Blast2go	wd40 repeat-containing protein smu1	-	-	56%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3		IPR012979	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5AA90

Fln msg: atg_distance in limit (1-15): atg_distance = 3, No stop codon before M and low homology subject, your sequence is longer than subject: 283 - 205

Fln protein: MGQLRWRANDCHPGGVRAVSFASNGRILYSTGADGMVCELDCETGHLNRKWNASKKAVSCLAISSDGRSLATASAELKVFDLLDRKKLQKFTGHPNSVRAMLFTENGKYIISSAAGERHVTMWKCDGSNGNGAAACVLSMEQPAVALDCKTFGEDGEGLSVLAVSEIGVAYIWRGQSVQELGLVKPSKVTVSSEELETQGTKPRRNSKLCIFAARLQEVISEDSVMVLVAYGNSAKPIFERRKLEKQDRDIILSASQNGVLLSSRHSKSSVKSNRQGMKSQH*

Protein Length: 284

Fln nts: CGTCGTGACCTTGGCTGTCAGTGGTTCATTGCTGGCTTTAGGCACCGGTGCGGGTGATGTTTTGGTTTTAGATACTACA_-_ATGGGGCAGCTGAGATGGAGAGCTAATGACTGTCATCCAGGGGGTGTTAGAGCTGTTTCATTCGCAAGCAATGGACGGATTCTATATAGTACTGGTGCTGATGGCATGGTATGTGAATTGGATTGCGAAACAGGGCATCTCAATCGAAAGTGGAACGCCTCTAAAAAGGCAGTTTCTTGTTTGGCTATCTCTTCTGATGGGAGAAGTTTGGCGACTGCATCGGCTGAATTGAAAGTTTTTGATTTGTTAGACAGAAAGAAATTGCAGAAGTTTACAGGGCATCCGAATTCGGTGAGGGCTATGCTGTTTACAGAAAATGGGAAGTATATAATCTCTTCTGCTGCTGGTGAGAGGCATGTTACTATGTGGAAATGTGATGGTAGCAATGGGAATGGGGCTGCTGCTTGTGTTCTTTCAATGGAACAACCGGCTGTGGCTTTGGACTGCAAGACTTTTGGTGAGGATGGTGAGGGCCTAAGTGTTCTTGCTGTCTCAGAGATAGGAGTTGCTTATATATGGCGTGGACAGAGTGTGCAAGAGTTGGGCTTGGTAAAACCTTCTAAAGTTACGGTATCTTCAGAGGAATTGGAAACTCAGGGTACAAAACCTAGGCGGAATAGTAAGCTTTGCATTTTCGCAGCAAGGCTACAAGAGGTAATAAGTGAAGATTCTGTGATGGTTTTAGTTGCATATGGTAATTCAGCAAAACCTATATTTGAGAGACGTAAGCTGGAGAAGCAAGACAGGGATATTATTCTGAGTGCTTCTCAGAATGGAGTGCTATTGTCCTCCAGGCATTCCAAGAGCTCTGTTAAGAGTAATCGACAAGGGATGAAGTCACAGCACTAGGTCCTGAAAATGCAGAGGATGCCATCCTTCCAATACCAAGGCTAGAGATTCCTGGAAGTGAAATACACAAG

Fln Alignment:

Contig2304___HPGGVRAVSFASNGRILYSTGADGMVCELDCETGH-LNRKWNASKKAVSCLAISSDGRSLATASAE--LKVFDLLDRKKLQKFTGHPNSVRAMLFT---ENGKYIISSAAGERHVTMWKCDGSN
D5AA90_______________HTDPITAVHFNRDGSLIVSSSRDGSCKIWDLSTGACLKTLIDDKTPVVSFVEFSPNGRFILAATLDDTLKLWNYATGKIMKTYTGHTNRVYCMTSTFSVTNGKYIVSGSE-DCCVYLWDLQGKN

SNPs (tot: 52)

Position	A %	C %	G %	T %	Probability
14	33		66		0.997452
16	33			66	0.997452
19	33	66			0.997452
21		33	66		1.0
22			33	66	1.0
23		33	66		1.0
24	33		66		1.0
93		20	80		0.995493
94	80		20		0.995493
96		20	80		0.995493
98	80			20	0.995493
101		20	80		0.995493
108	80		20		0.995493
143	25		75		0.996473
203		40		60	1.0
209	60		40		1.0
211	60	40			1.0
213	50			50	1.0
214			60	40	1.0
219	60		40		1.0
307			57	42	1.0
308			85	14	0.993533
313	85	14			0.993533
317	85		14		0.993533
318	85	14			0.993533
319	85			14	0.993533
322	16			83	0.994512
323		16		83	0.994512
325		16		83	0.994512
326	16		83		0.994512
470	75		25		0.996473
471	75			25	0.996473
472		25		75	0.996473
474			75	25	0.996473
477	75	25			0.996473
478		25		75	0.996473
479			75	25	0.996473
480			75	25	0.996473
490	25			75	0.996473
491		25		75	0.996473
492			75	25	0.996473
493		25		75	0.996473
494	25		75		0.996473
602		25		75	0.996473
604			75	25	0.996473
609	25		75		0.996473
610	75	25			0.996473
613	75			25	0.996473
615	75		25		0.996473
616		25	75		0.996473
621	25		75		0.996473
624	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain