SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene2265

Length: 1323 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene2265

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4352	45/52
SustainPine v2.0	sp_v2.0_unigene24591	1/52
SustainPine v2.0	sp_v2.0_unigene77880	3/52

Source	Descriptions	Term	Type	Identity
AutoFact	WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9SRX4_RICCO	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	protein	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Histone acetyltransferase.	EC:2.3.1.48	-	0.0	79%

Source	GOs	Term	Type	Identity
Blast2go	histone acetylation	GO:0016573	Biological Process	79%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	79%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	79%
Blast2go	histone acetyltransferase activity	GO:0004402	Molecular Function	79%
Blast2go	heterotrimeric G-protein complex	GO:0005834	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3		IPR019782	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWX1

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 197 - 368

Fln protein: S*PWLSLNLISGSCTKLSSSLVYFFELMQKSLGFQRAVVFLFMNLCGHTSTVWAVSFNSSGDRMVSCSDDLTLMVWDTSINPAERSGNGGPWKHLCTISGYHDRTIFSVHWSRSGLIASGASDDCIRLFSENTDDSVTPVDGTSYKLILKKEKAHSMDVNSVQWHPSEPQLLASASDDGRIKIWEVTRINGLANSH*

Protein Length: 198

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTAATCTCTGGATCGTGTACTAAGCTCTCAAGCTCTCTTGTATATTTTTTTGAATTAATGCAAAAGTCTTTGGGGTTTCAACGTGCTGTAGTGTTCCTCTTCATGAATTTATGTGGTCATACATCAACAGTGTGGGCGGTATCTTTTAATTCTTCCGGAGACAGAATGGTCTCCTGCAGCGATGACTTAACGTTGATGGTTTGGGATACAAGCATAAACCCAGCAGAGAGAAGTGGAAATGGTGGGCCCTGGAAACATCTTTGCACCATTTCTGGATATCATGATCGAACAATATTCTCAGTTCACTGGTCAAGGAGCGGTCTTATTGCTAGTGGAGCATCCGACGATTGTATCAGGCTCTTTAGTGAGAACACTGATGATTCTGTGACACCGGTTGATGGCACATCGTATAAGTTGATTTTAAAAAAGGAAAAGGCTCACTCAATGGATGTGAATTCAGTCCAATGGCATCCCTCAGAGCCTCAGCTACTGGCTTCAGCAAGTGATGATGGTCGTATTAAGATATGGGAAGTTACTCGGATAAATGGACTAGCAAACAGCCATTGA___CATAGCATCATTCCACATGACATCTAAAGGATGGAAGACTGGTATATATTACCTACAGGGGAAGCAAATTTCTTAATTGTTGCTTCTTGTTGTCTCTCAGCTTCTCTGTGGGTTTGCTTGTGGGGGGTACTTTAGTCAATAAAAGTGAAGTGAATCATGATATAAAGGGTTTAAGTAAAGAGATGAGAATAAGCCGATTTTAGTGAAATACAACTGGTATGGCATTTATTGTGGCTGATTTTCCCTGTATGAGCTCTGAAGCAGATTTCATGACTAAATTTTCATTAGGTTTTTCTGGAGCTTAACATAAATCAACATCAAGTCTGATTTGGAATATTTGTTTTGTTAGTTAAAATTATTTTGATTTCTCAGATAATGCCCTTGGTCTGGTATTGTAGATATTCTATACTGAGTAGTAATGGAATGTAAATTATAACTGCCATGAAGCAATGGAACACTATAATGAAGCACCAAGAGCTTGTTTATAATGAAGCTCTTATCCTTTCTTTCTTTAACATTCGAAGAATGGAATTTAGAACTCTTATTGCTAAGTAAAAAGTTTTAACACAGTTTGATGTTCTGTTTACACACTACTATTTTGAATTTTCTGACAAATGTGCTTCTCATCAAATGAACGATGAATGTTCACGAGAAGATGGGATGGCTTCAAATGTGTAGAAGAATATGATGAAATGTGTAGTTGAAGATTTAAAAGATAGAAATACTAGCT

Fln Alignment:

Contig2265___NLCGHTSTVWAVSFNSSGDRMVSCSDDLTLMVWDTSINPAERSGNG-GPWKHLCTISGYHDRTIFSVHWSRSGLIASGASDDCIRLFSENTDDSVTP-VDGTSYKLILKKEKAHSMDVNSVQWHPSEPQLLASASDDGRIKIWEVTRINGLAN
A9NWX1_______________SISGHTSTVWAMSFNSSGDRMVSCSDDLTLMVWDTSINPAERSGNGCGPWKHLCTISGYHDRTIFSVHWSRGGLIASGASDDCIRLFSESTDDSATPQVDGPSYKLILKKEKAHSMDVNSVQWHPSEPQLLASASDDGRIKIWEVTRINGLAN

SNPs (tot: 100)

Position	A %	C %	G %	T %	Probability
119		33	66		0.997452
120			33	66	0.997452
123		66	33		0.997452
125		66	33		0.997452
126	33			66	0.997452
127		33		66	0.997452
129	66			33	0.997452
132	66		33		0.997452
133	66	33			0.997452
135			33	66	0.997452
137	66	33			0.997452
138	33			66	0.997452
191	80	20			0.995493
192	80		20		0.995493
194		20	80		0.995493
197		80	20		0.995493
198	20			80	0.995493
203		80		20	0.995493
204	80		20		0.995493
207			80	20	0.995493
208	80		20		0.995493
210		20	80		0.995493
214		20		80	0.995493
352			25	75	0.996473
354	75	25			0.996473
355			25	75	0.996473
358	25	75			0.996473
359		25		75	0.996473
360	75	25			0.996473
361			75	25	0.996473
366		25	75		0.996473
367		75		25	0.996473
368	75		25		0.996473
371	25	75			0.996473
372		25	75		0.996473
373	75			25	0.996473
375	25		75		0.996473
573	88	11			0.923564
574	88	11			0.923564
575	88			11	0.923564
582	88		11		0.923564
583			88	11	0.923564
586	88	11			0.923564
587	88			11	0.923564
619	75		25		1.0
622			27	72	1.0
623	72			27	1.0
624	72		27		1.0
626		27	72		1.0
627		27	72		1.0
628	70			30	1.0
632	72	27			1.0
633	72			27	1.0
635	81			18	0.999994
638	18		72		0.999994
639		30	70		1.0
640	10			90	0.90298
641	80	20			0.999996
642	20			80	0.999996
657		11	77	11	0.968132
659	88			11	0.923564
660	77	22			0.999999
661		11	88		0.923564
662		77	11	11	0.968132
663	88			11	0.923564
664	77	11	11		0.968132
665	77	11	11		0.968132
666		11		88	0.923564
668			11	88	0.923564
670		11		88	0.923564
672	77	22			0.999999
674		11		88	0.923564
676		11	88		0.923564
677	11			88	0.923564
690	22			77	0.999999
703		87	12		0.992554
718		12		87	0.992554
719		12	87		0.992554
720	12		75	12	0.975346
721		12	87		0.992554
723			12	87	0.992554
728		12		87	0.992554
733			12	87	0.992554
735	87			12	0.992554
736	87		12		0.992554
739	12	12	75		0.975346
741	87	12			0.992554
742			87	12	0.992554
743		12		87	0.992554
744	12		87		0.992554
780	12			87	0.992554
821	85	14			0.999981
824			14	85	0.999981
826		14		78	0.999974
956	87			12	0.992554
973	90		9		0.999872
1001		50	50		1.0
1082	50		50		1.0
1145		42	57		1.0
1188		75	25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain