SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene2255

Length: 1072 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene2255

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2395	40/41

Source	Descriptions	Term	Type	Identity
AutoFact	Putative synaptobrevin-like protein [Oryza sativa Japonica Group]	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	32%
Blast2go	vesicle-associated membrane protein 714	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	response to salt stress	GO:0009651	Biological Process	88%
Blast2go	vesicle-mediated transport	GO:0016192	Biological Process	88%
Blast2go	integral to membrane	GO:0016021	Cellular Component	88%
Blast2go	vacuole	GO:0005773	Cellular Component	88%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Longin	IPR010908	-	0.0	-
Sma3	Synaptobrevin	IPR001388	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9P2K7

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: PWLSLTLVGRGTVVLAEFSAVGGNAGTVARRIMEKLPLQDRGEGESHLCYSQDRHIFHILRGSNGLTFLCMANDTFGRRIPFAYLEDIQMRFMKTYGRVAHNALAYAMNDEFSRVLHQQMEYFSSNPNADTLTRVRGEMNEVRTVMVENIEKILERGDRIELLVDKTSTIQDNACHSFQEAVQATTTSTLDEECKAFGFIDLLDCCAPVYHNCFVLWWYNSSILSIMIFTNLGHGTFG*

Protein Length: 240

Fln nts: CGTCGTGACCTTGGCTGTCACTCGTCGTGACCTTGGCTGTCACTCACATTAGTGGGGAGGGGAACAGTGGTTTTAGCCGAATTCAGCGCAGTGGGTGGGAATGCAGGAACAGTCGCCAGACGAATCATGGAGAAGCTTCCTCTCCAAGATCGCGGAGAAGGAGAAAGTCACCTATGCTATTCTCAGGATCGCCACATCTTCCACATATTAAGAGGATCCAATGGATTAACCTTCCTCTGCATGGCCAACGACACCTTTGGCAGACGAATTCCATTTGCATATTTAGAGGATATTCAAATGAGATTTATGAAGACATACGGCCGTGTGGCTCACAATGCACTTGCTTATGCAATGAATGATGAATTTTCTAGAGTTCTGCATCAGCAGATGGAGTATTTCTCTAGCAACCCCAATGCAGACACCTTAACACGTGTTAGGGGGGAAATGAATGAGGTACGCACAGTTATGGTTGAAAACATAGAAAAAATCCTAGAAAGAGGGGATAGAATTGAACTTCTGGTTGATAAAACATCAACTATTCAGGACAATGCCTGTCATTCATTTCAAGAAGCAGTCCAGGCGACTACGACAAGCACTTTGGATGAAGAATGCAAAGCTTTTGGCTTCATTGACTTGCTTGATTGTTGTGCTCCTGTATATCATAATTGCTTTGTGTTGTGGTGGTATAACTCTTCCATCTTGTCGATCATGATTTTCACAAATCTTGGCCATGGAACTTTCGGATGA___TGTTCTGTTTGCCCGTCCGTCTTTCAAGGCTATCTATGAAAACATCATCAGTTGTGTGCCAGACCCAATCTACAGCTTATGATGGTGTAAAAAGGCTGTTTTCTTGGAGATCAGTTAGACTGATGCAATGAAATTTTGCTCAAGAATCTCAGGCTACTTGAAAGCTTGGTATGTGTGGAGGAAGGCTTCTGTATTTATGAGATGTTTTCATTTGTAATGTCTGCTCTTTTGCAGATTAGTATAGTGCACAAGGTATTAATACTGCACACGCTTCTGGTTCATGGATTAACCGATGGATATAATTTTAATGGCAATTAAAAAAACA

Fln Alignment:

Contig2255___LSLTLVGRGTVVLAEFSAVGGNAGTVARRIMEKLPLQDRGEGESHLCYSQDRHIFHILRGSNGLTFLCMANDTFGRRIPFAYLEDIQMRFMKTYGRVAHNALAYAMNDEFSRVLHQQMEYFSSNPNA-DTLTRVRGEMNEVRTVMVENIEKILERGDRIELLVDKTSTIQDNA
A9P2K7_______________LIYSFVARGNIVLAEHTSFSGNFSIIAVQCLQKLP-----SNSNKFTYTCDNHTFNYLV-DDGFVFLVVSDEAAGRQVPFLFLERVKEDFKRRYGGRAETSMAHSLDKDYGPILRDHMQYCMDHPEELSKFSKIKAQVSEVKGIMMDNIEKVLDRGEKIELLVDKTEGLQFQA

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
189		18	81		0.999994
190	81		18		0.999994
194		81		18	0.999994
195		81	18		0.999994
198	81	18			0.999994
202			18	81	0.999994
203		81	18		0.999994
205	81			18	0.999994
206		81	18		0.999994
207	81			18	0.999994
208		18		81	0.999994
210		18		81	0.999994
212	81	18			0.999994
518			25	75	0.996473
526		25	75		0.996473
531	75	25			0.996473
533	75		25		0.996473
534	75			25	0.996473
535	75	25			0.996473
545	66	33			1.0
546			33	66	1.0
549	66		33		1.0
550			66	33	1.0
554	66	33			1.0
555	66			33	1.0
557			33	16	1.0
558		16	33	50	1.0
559		83	16		0.994512
565		33		66	1.0
651		14		85	0.993533
654		14		85	0.993533
658	14	85			0.993533
659		14		85	0.993533
664			10	90	0.90298
666			10	90	0.90298
667	90		10		0.90298
668		10		90	0.90298
670	90			10	0.90298
673	90		10		0.90298
678	10			90	0.90298
679		10		90	0.90298
681		10	90		0.90298
682	10			90	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain