SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene2219

Length: 1006 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene2219

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18735	12/16

Source	Descriptions	Term	Type	Identity
AutoFact	Alternative oxidase n=1 Tax=Picea sitchensis RepID=A9NQ56_PICSI	-	-	87%
FL-Next	sp=Alternative oxidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	immutans protein	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	carotenoid biosynthetic process	GO:0016117	Biological Process	78%
Blast2go	plastid organization	GO:0009657	Biological Process	78%
Blast2go	thylakoid	GO:0009579	Cellular Component	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Alternative oxidase	IPR002680	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQ56

Fln msg: your sequence is shorter than subject: 223 - 347

Fln protein: VVTLAVTQFLSVLHMYESFGWWRRTDYLKVHFAESWNELHHLLIMEALGGNERWFDRFLAQHIAVFYYFMTAFMYILSPRMAYHFSEYVEKHAYSTYDKFIKLHEEELKKLPAPDVAVKYYMQGDLYLFDEFQTDRTPCSRRPKIENLYDVFFNIRDDEAEHCKTMKACQTHGNLISPHHDTTSTEDDTECSLPPAECAGIADCVRKAVSNPPRSEKSSRRH*

Protein Length: 224

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTCTATCAGTACTGCACATGTATGAAAGTTTTGGTTGGTGGAGAAGGACTGATTACTTGAAGGTACATTTTGCGGAGAGCTGGAATGAACTACACCATTTGCTTATCATGGAGGCTTTGGGAGGAAACGAAAGGTGGTTTGACCGGTTTTTGGCTCAGCATATCGCCGTGTTCTATTACTTCATGACAGCCTTTATGTACATATTGAGTCCAAGGATGGCTTATCACTTTTCTGAATATGTGGAGAAGCATGCCTACTCGACATATGATAAATTTATCAAGCTCCACGAAGAAGAGTTGAAAAAACTGCCAGCACCTGATGTAGCTGTGAAGTACTACATGCAAGGCGATCTCTATCTCTTTGATGAGTTTCAGACTGACCGTACACCTTGTTCACGAAGACCAAAAATTGAAAATCTTTATGATGTGTTTTTTAATATTCGAGATGATGAAGCAGAGCATTGTAAAACTATGAAGGCTTGTCAAACCCATGGAAACCTCATTTCCCCACATCATGATACAACATCAACAGAAGATGATACGGAGTGTAGTCTACCTCCAGCAGAGTGTGCCGGAATTGCAGATTGTGTGAGAAAGGCAGTTTCAAATCCTCCCCGCTCAGAAAAATCGAGTCGCAGGCACTGA___TCCTATCCCCTGGACTAGAGTGTAGAATAAATGCCGATTTAATTTGGAATTTGTCTAAACCGTTATACTTGAGTATAATGGTTATCCAGGGCCAGGTTTATGGTAAGGATCCAAAATGTAAGTTATAAATATATAGATTTTTTTTGGTAATGTATAATTTGGACTTAGACTTGAATAAAGAACCGGAACAGTAATCTGATGAAACATACAAGAGATTTTATTAATCCAGACCAAAGCCCAAAATTGATTGTACAGTACATGACCAGGTTTCCTTATAAAGGAAAATAACATGTACTCAACTGTAATTCACTCATTTACTTAACTGCGGCTGTTCGC

Fln Alignment:

Contig2219___FLSVLHMYESFGWWRRTDYLKVHFAESWNELHHLLIMEALGGNERWFDRFLAQHIAVFYYFMTAFMYILSPRMAYHFSEYVEKHAYSTYDKFIKLHEEELKKLPAPDVAVKYYMQGDLYLFDEFQTDRTPCSRRPKIENLYDVFFNIRDDEAEHCKTMKACQTHGNLISPHHXXXXXXXXXXCSLPPAECAGIADCVRKAVSNPPRSEKSSRR
A9NQ56_______________FVSVLHMYESFGWWRRTDYLKVHFAESWNELHHLLIMEALGGNERWFDRFLAQHIAVFYYFMTASMYILSPRMAYHFSECVEKHAYSTYDEFIKLQGEELKKLPAPDVAVKYYTQGDLYLFDEFQTDRTPCSRRPKVENLYDVFVNIRDDEAEHCKTMKACQTHGNLMSPHHDTTSTEDDTGCSLPPADCAGIVDCVGKALSNPLHSEKSSQK

SNPs (tot: 56)

Position	A %	C %	G %	T %	Probability
31		33		66	0.997452
32	66		33		0.997452
43			66	33	0.997452
44		66	33		0.997452
45	66		33		0.997452
51	66	33			0.997452
52	33			66	0.997452
53		33	66		0.997452
54	66			33	0.997452
55	66	33			0.997452
451			25	75	0.996473
453		25		75	0.996473
454	75		25		0.996473
459		25		75	0.996473
460			75	25	0.996473
463			33	66	0.997452
464		33		66	0.997452
466			33	66	0.997452
468		33		66	0.997452
470	66	33			0.997452
562	80		20		0.995493
565	80	20			0.995493
566			80	20	0.995493
567	80			20	0.995493
568	80		20		0.995493
570	80	20			0.995493
573	80			20	0.995493
574		20		80	0.995493
577			80	20	0.995493
578		20	80		0.995493
600	83	16			0.994512
608			83	16	0.994512
610	83		16		0.994512
611	83	16			0.994512
613			16	83	0.994512
614			83	16	0.994512
618	83	16			0.994512
620		16		83	0.994512
621	16		83		0.994512
630	50			50	1.0
664	16		83		0.994512
709	85	14			0.993533
710	85		14		0.993533
712		14	85		0.993533
713		85	14		0.993533
714		85		14	0.993533
717		14		85	0.993533
720	85		14		0.993533
721	85		14		0.993533
722		14		85	0.993533
724			14	85	0.993533
725			85	14	0.993533
726		14	85		0.993533
728	85	14			0.993533
824			33	66	0.997452
826			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain