SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene2217

Length: 963 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene2217

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25439	32/37

Source	Descriptions	Term	Type	Identity
AutoFact	putative methyltransferase PMT3 [Arabidopsis thaliana] ref\|NP_001031639.1\| putative methyltransferase PMT3 [Arabidopsis thaliana] sp\|Q93YV7.1\|PMT3_ARATH RecName: Full=Probable methyltransferase PMT3 gb\|AAL24095.1\| putative ankyrin protein [Arabidopsis tha	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	methyltransferase pmt3	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	77%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	77%
Blast2go	nucleus	GO:0005634	Cellular Component	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Putative S-adenosyl-L-methionine-dependent methyltransferase	IPR004159	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKS3

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 235 - 637

Fln protein: S*PWLSLILMKACITRYSDQIHNAKGSRLAPWPKRLTAPPPRLVELCISLAAFVKDTKAWRERVNSYWKHMKSEIEHDTLRNIMDMNANLGAFGAALKDKPVWVMNVVPESGPNTLKAIYDRGLMGTLHNWCEAFSAYPRTYDLLHAWHIFSDINERGCSIEDLLLEMDRILRPTGFIIIRDKAAIVNYIMKYLAPLRWDSWSSNVEPESDPLSSGDEIVLMARKRLWLPGETH*

Protein Length: 236

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTAATGAAGGCATGCATTACGCGTTATTCAGATCAAATTCATAATGCAAAGGGGAGTCGGTTAGCACCTTGGCCAAAGCGGTTGACTGCTCCTCCACCTAGGCTGGTAGAACTTTGTATCAGTTTGGCTGCTTTTGTGAAGGACACGAAGGCTTGGCGTGAAAGGGTTAATTCATATTGGAAGCATATGAAGTCCGAGATTGAGCATGATACTTTGAGGAATATCATGGATATGAATGCAAATTTAGGTGCATTTGGTGCTGCCCTTAAAGATAAGCCTGTATGGGTAATGAACGTTGTTCCTGAAAGCGGTCCAAACACATTAAAAGCCATTTATGACCGAGGCCTTATGGGTACTCTACATAACTGGTGTGAAGCATTTTCGGCTTACCCACGTACCTATGATTTACTTCATGCTTGGCATATTTTCTCGGATATCAATGAGCGAGGTTGTAGTATTGAAGATTTGCTTCTAGAGATGGATAGGATTCTCCGTCCGACTGGCTTTATCATTATCAGAGACAAGGCTGCTATTGTAAACTACATCATGAAATATTTGGCACCTTTGCGATGGGATTCGTGGTCTTCCAATGTAGAGCCCGAGTCAGACCCTTTATCTTCAGGAGACGAAATAGTACTAATGGCAAGAAAGCGATTATGGTTGCCTGGAGAAACCCATTAG___CAATTTTCTTGTAAATAAGTCGTAGTCAATCTGTATAGTTGTTGAGACCAAACTAAGTATTCAGGCTTTAGCTGAAAGGGGAAGGTGCTTCTTTTTGGAAAATGTTTCTGCTGCAGTTTGATTTATGAGGGATACGTCCTCTTATTTTCTTTTAAACAAAGGAGAAAACTGCTTTTTGATATTACATAGTAATTGACAATGCAAGATAGCAACCAATTCCTAGATTTGCTGACATCTGCATTTCTATGAAAGTTTA

Fln Alignment:

Contig2217___ILMKACITRYSDQIHNAKGSRLAPWPKRLTAPPPRLVELCISLAAFVKDTKAWRERVNSYWKHMKSEIEHDTLRNIMDMNANLGAFGAALKDKPVWVMNVVPESGPNTLKAIYDRGLMGTLHNWCEAFSAYPRTYDLLHAWHIFSDINERGCSIEDLLLEMDRILRPTGFIIIRDKAAIVNYIMKYLAPLRWDSWSSNVEPESDPLSSGDEIVLMARKRLWLPGETH
B8LKS3_______________VLMKACITPYSDKIHHAKGSGLAPWPKRLTAPPPRLVELGISEEDFVKDTKAWRQRVNSYWKHMKSEIEHDTLRNIMDMNANLGAFGAALKDKAVWVMNVVPENGPNTLKAIYDRGLMGTLHNWCEAFSTYPRTYDLLHAWNIFSDIDERGCSIEDLLLEMDRILRPTGFIIIRDKPAIVNYIMKYLAPLRWDSWSSNVEPESDPLSSGDEIVLMARKQLSLPGGSH

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
436	85	14			0.993533
535		13		86	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain