SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene2196

Length: 2308 nt

UniGene Fasta

>uagpf_v2_unigene2196
CGTCGTGACCTTGGCTGTCACTCAGGGCAGGCTGAGCTTCTTAAGGAAAACACCATCGAACCCGGAAACTGGGAAACGCAAGCTGCAGAGTCTAAAGGTGAGACGTCGTGACCTTGGCTGTCACTCAAGACGAGAAAAAAGAATCACCGCAGTCACAGAGTCAGAATGCAGAGGACAAGTCCGTAAAGGGCCAGGAATCTAGTAAGCAGCTGGAAGGTCAGGACAAGGATTCCAAAAAATCAAAGGAGAAAAACAAAGACCAGTCCAATCAAGTTAATGGCAACTCGTATAATTGGCAAATTTGCAATTCAACAGCTGGTCCAGATTACATTCCTTGTCTTGATAATTTTGAGGCTATCCAAAAACTCCCAAGTACTAAACATTATGAGCATCGAGAGAGACATTGCCCTAAAGATCCTCCAACATGTATTGTTCCTCTACCAGAAGGCTACAGATTGCCCGTACATTGGCCAGAGAGCAGAGATAAGATATGGTACAACAATGTCCCTCACACCAAGCTTGCGGAGTACAAAAAACATCAAAATTGGGTGAGGGTATCTGGAGAATATGTTATTTTCCCTGGAGGTGGGACTCAATTCAAAAATGGAGCTCTTCACTACATAGATTTTATTGAGGAGACTATTCCAGATGTTGCATGGGGAAGGCGGAGCCGTGTGGTATTGGATGTCGGTTGTGGAGTTGCCAGTTTTGGAGGCTTCCTATTTGAAAGACAGGTCCTGACCATGTCCCTTGCACCTAAAGACGAGCATGAAGCACAAGTGCAGTTTGCTCTTGAACGTGGTATTCCTGCAATATCAGCTGTGATGGGCACTCAAAGGCTTCCTTTTCCCAGTACTGTTTTTGATGTTGTGCATTGTGCTCGATGCAGGGTTCCATGGCATGCTGATGGTGGCAAGCTTCTTCTAGAGCTGAATCGCTTATTAAGGCCAGGGGGTTATTTTGTGTGGTCAGCTACTCCTGTCTATCAAAACAAGGAAGAAGATGTTCAGATTTGGAAAGAGATGTCTTCTTTGACTGCATCTATCTGCTGGAATCTCCTTGCAAAGAAAGGTGATGAAGTCAATGAAGTGGGTGTTGCAATCTATCAAAAACCAACCTCTAATCATTGCTACGAATCCAGAAGGAAAAATGAGCCTCCTTTGTGTGAAAAGGAAGGCGATCTTAATGCAGCTTGGTATGTTCCAATGGAGAGTTGCTTGCAAAGAGTGCCACATGAGGATGAGGAACGTGGAAGTGAGTGGCCAGAAGAATGGCCTTCAAGGCTCGAAAAAGTTCCTTACTGGTTAAAGAAGGATGTGCATGATTCTTTCATCTCAGATACAGAGCATTGGAAAAGGGTTGTAAGCAAGTCATACCTTGTGGGGATGGGAATTGATTGGTCTGCTGTTCGGAATGTTATGGACATGAAAGCAGTTTATGGAGGATTTGCAGCGGCTCTAGCATCACAGCCAGTTTGGGTTATGAATGTTGTGCCAATTGATGCTCCAAACACGCTTCCAGTTATCTATGAGCGTGGTCTGTTTGGTATATATCATGACTGGTGTGAGTCATTCAGTACTTACCCCAGAACATACGATCTTTTGCATGCCGATCACTTGTTCTCTAAGCTGAAGAAAAGGTGTAGCCTAGTTTCTGTAATGGCAGAGGTTGATCGCATTTTAAGGCCAGGGGGTTCAATCATCTTTCGTGACAATGTGGAGACATTGAATGAATTGGAAAACATGATAAAGTCACTACAGTGGCAAATCCGAATGACATACTCTCAAGACAAGGAAGGGATCCTCTGTGCACAGAAAACCATGTGGCGGCCACAGCAAGTAGCTTGAATGCTTTCATTCATTGTCACTGGCAGCAACATTCATGTGTACAAATGGTTCAAATCAATTCGGAACCTGCTCTACTGTATGTTAGAGCCTGAATTTCTTCCAGAAGAGCAAGTGGTTTTTTGATTCTTTAATTGTATTGCCAGAGTCTGTTCACCTTTACTAGATTTTATTAGTTCTCTATATATTCCTCCCTATCCCCTTCAAATGAAGGAATTCGTGTAAGAACACGCATGTTTTATCGTTCAGTTAAATTCTGGATGACGCATGTTTGTTTAATGTTTCAGATAATTCTGGATGTAGTATCATTTGCTTCTACTCTGGGGCTTTAACAGGGGTTTGGTCACAATCATCTGTTATATGAGTTTTATTTAATTTAAACTGTGACAAATTATAAGGCTTATTCTCTACAAATTACTTTCACCAAAACTTTTTTTAATTTTATAAGAGGCTGTTCCCTCTTT

Ace file of the UniGene uagpf_v2_unigene2196

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23604	101/109
SustainPine v2.0	sp_v2.0_unigene80284	1/109

Source	Descriptions	Term	Type	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RRE2_RICCO	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	44%
Blast2go	ankyrin-like protein	-	-	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	0.0	65%

Source	InterPros	Term	Type	Identity
Sma3	Cystathionine beta-synthase, core	IPR000644	-	-
Sma3	Glycoside hydrolase, family 10	IPR001000	-	-
Sma3	Flavodoxin	IPR001094	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Domain of unknown function DUF21	IPR002550	-	-
Sma3	Putative S-adenosyl-L-methionine-dependent methyltransferase	IPR004159	-	-
Sma3	Radical SAM	IPR007197	-	-
Sma3	Cytokine-induced anti-apoptosis inhibitor 1	IPR007785	-	-
Sma3	Flavodoxin/nitric oxide synthase	IPR008254	-	-
Sma3	tRNA wybutosine-synthesis	IPR013917	-	-
Sma3		IPR017909	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXM2

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 582 - 601

Fln protein: DVVTLAVTQDEKKESPQSQSQNAEDKSVKGQESSKQLEGQDKDSKKSKEKNKDQSNQVNGNSYNWQICNSTAGPDYIPCLDNFEAIQKLPSTKHYEHRERHCPKDPPTCIVPLPEGYRLPVHWPESRDKIWYNNVPHTKLAEYKKHQNWVRVSGEYVIFPGGGTQFKNGALHYIDFIEETIPDVAWGRRSRVVLDVGCGVASFGGFLFERQVLTMSLAPKDEHEAQVQFALERGIPAISAVMGTQRLPFPSTVFDVVHCARCRVPWHADGGKLLLELNRLLRPGGYFVWSATPVYQNKEEDVQIWKEMSSLTASICWNLLAKKGDEVNEVGVAIYQKPTSNHCYESRRKNEPPLCEKEGDLNAAWYVPMESCLQRVPHEDEERGSEWPEEWPSRLEKVPYWLKKDVHDSFISDTEHWKRVVSKSYLVGMGIDWSAVRNVMDMKAVYGGFAAALASQPVWVMNVVPIDAPNTLPVIYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSKLKKRCSLVSVMAEVDRILRPGGSIIFRDNVETLNELENMIKSLQWQIRMTYSQDKEGILCAQKTMWRPQQVA*

Protein Length: 583

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGGCAGGCTGAGCTTCTTAAGGAAAACACCATCGAACCCGGAAACTGGGAAACGCAAGCTGCAGAGTCTAAAGGTGAGACGTCGTGACCTTGGCTGTCACTCAAGACGAGAAAAAAGAATCACCGCAGTCACAGAGTCAGAATGCAGAGGACAAGTCCGTAAAGGGCCAGGAATCTAGTAAGCAGCTGGAAGGTCAGGACAAGGATTCCAAAAAATCAAAGGAGAAAAACAAAGACCAGTCCAATCAAGTTAATGGCAACTCGTATAATTGGCAAATTTGCAATTCAACAGCTGGTCCAGATTACATTCCTTGTCTTGATAATTTTGAGGCTATCCAAAAACTCCCAAGTACTAAACATTATGAGCATCGAGAGAGACATTGCCCTAAAGATCCTCCAACATGTATTGTTCCTCTACCAGAAGGCTACAGATTGCCCGTACATTGGCCAGAGAGCAGAGATAAGATATGGTACAACAATGTCCCTCACACCAAGCTTGCGGAGTACAAAAAACATCAAAATTGGGTGAGGGTATCTGGAGAATATGTTATTTTCCCTGGAGGTGGGACTCAATTCAAAAATGGAGCTCTTCACTACATAGATTTTATTGAGGAGACTATTCCAGATGTTGCATGGGGAAGGCGGAGCCGTGTGGTATTGGATGTCGGTTGTGGAGTTGCCAGTTTTGGAGGCTTCCTATTTGAAAGACAGGTCCTGACCATGTCCCTTGCACCTAAAGACGAGCATGAAGCACAAGTGCAGTTTGCTCTTGAACGTGGTATTCCTGCAATATCAGCTGTGATGGGCACTCAAAGGCTTCCTTTTCCCAGTACTGTTTTTGATGTTGTGCATTGTGCTCGATGCAGGGTTCCATGGCATGCTGATGGTGGCAAGCTTCTTCTAGAGCTGAATCGCTTATTAAGGCCAGGGGGTTATTTTGTGTGGTCAGCTACTCCTGTCTATCAAAACAAGGAAGAAGATGTTCAGATTTGGAAAGAGATGTCTTCTTTGACTGCATCTATCTGCTGGAATCTCCTTGCAAAGAAAGGTGATGAAGTCAATGAAGTGGGTGTTGCAATCTATCAAAAACCAACCTCTAATCATTGCTACGAATCCAGAAGGAAAAATGAGCCTCCTTTGTGTGAAAAGGAAGGCGATCTTAATGCAGCTTGGTATGTTCCAATGGAGAGTTGCTTGCAAAGAGTGCCACATGAGGATGAGGAACGTGGAAGTGAGTGGCCAGAAGAATGGCCTTCAAGGCTCGAAAAAGTTCCTTACTGGTTAAAGAAGGATGTGCATGATTCTTTCATCTCAGATACAGAGCATTGGAAAAGGGTTGTAAGCAAGTCATACCTTGTGGGGATGGGAATTGATTGGTCTGCTGTTCGGAATGTTATGGACATGAAAGCAGTTTATGGAGGATTTGCAGCGGCTCTAGCATCACAGCCAGTTTGGGTTATGAATGTTGTGCCAATTGATGCTCCAAACACGCTTCCAGTTATCTATGAGCGTGGTCTGTTTGGTATATATCATGACTGGTGTGAGTCATTCAGTACTTACCCCAGAACATACGATCTTTTGCATGCCGATCACTTGTTCTCTAAGCTGAAGAAAAGGTGTAGCCTAGTTTCTGTAATGGCAGAGGTTGATCGCATTTTAAGGCCAGGGGGTTCAATCATCTTTCGTGACAATGTGGAGACATTGAATGAATTGGAAAACATGATAAAGTCACTACAGTGGCAAATCCGAATGACATACTCTCAAGACAAGGAAGGGATCCTCTGTGCACAGAAAACCATGTGGCGGCCACAGCAAGTAGCTTGA___ATGCTTTCATTCATTGTCACTGGCAGCAACATTCATGTGTACAAATGGTTCAAATCAATTCGGAACCTGCTCTACTGTATGTTAGAGCCTGAATTTCTTCCAGAAGAGCAAGTGGTTTTTTGATTCTTTAATTGTATTGCCAGAGTCTGTTCACCTTTACTAGATTTTATTAGTTCTCTATATATTCCTCCCTATCCCCTTCAAATGAAGGAATTCGTGTAAGAACACGCATGTTTTATCGTTCAGTTAAATTCTGGATGACGCATGTTTGTTTAATGTTTCAGATAATTCTGGATGTAGTATCATTTGCTTCTACTCTGGGGCTTTAACAGGGGTTTGGTCACAATCATCTGTTATATGAGTTTTATTTAATTTAAACTGTGACAAATTATAAGGCTTATTCTCTACAAATTACTTTCACCAAAACTTTTTTTAATTTTATAAGAGGCTGTTCCCTCTTT

Fln Alignment:

Contig2196___DYIPCLDNFEAIQKLPSTKHYEHRERHCPKDPPT----CIVPLPEGYRLPVHWPESRDKIWYNNVPHTKLAEYKKHQNWVRVSGEYVIFPGGGTQFKNGALHYIDFIEETIPDVAWGRRSRVVLDVGCGVASFGGFLFERQVLTMSLAPKDEHEAQVQFALERGIPAISAVMGTQRLPFPSTVFDVVHCARCRVPWHADGGKXXXXXXXXXXPGGYFVWSATPVYQNKEEDVQIWKEMSSLTASICWNLLAKKGDEVNEVGVAIYQKPTSNHCYESRRKNEPPLCEKEGDLNAAWYVPMESCLQRVP--HEDEERGSEWPEEWPSRLEKVPYWLK--KDVHDSFISDTEHW-KRVVSKSYLVGMGIDWSAVRNVMDMKAVYGGFAAALASQPVWVMNVVPIDAPNTLPVIYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSKLK------KRCSLVSVMAEVDRILRPGGSIIFRDNVETLNELENMIKSLQWQIRM----TYSQDKEGILCAQKTMW
A9NXM2_______________DYSPCEDPRRSSHF--SRERNVYRERHCP--PPDQNLLCLIPPPLDYKIPLPWPESLHKIWHSNMPHNKIADRKGHQGWMKEEGPYFIFPGGGTMFPDGAIQYIQKLKQYLP--ISGGTIRTALDVGCGVASFGGYMLKEDILTMSFAPRDSHKSQIQFALERGIPAFLAMLGTHRLPFPAHVFDLIHCSRCLVPFTAYNGSYMIEMDRLLRSGGYFVISGPPVQWPKQE--KEWADLQDLARTLCYELVIVDGN------TAIWKKPSNNSCFSLKSVPGPYLCDEHDDPNVGWYVPLKACISRFPSLKERENNLIELP-KWPSRLNDPPQRATDIKNFLDIFKADTRRWQRRVTYYKNVLNLKLGSSSVRNLMDMNAGFGGFAAAVIADPVWIMNVVPAYTSNTLGVIYDRGLIGVYHDWCEAFSTYPRTYDFIHAIGIESLIRDLSRGGDRCSLVDLMIEMDRILRPEGTVVVRDTPKVIDRVAKIASAIHWSTEVYDTEPESNGKEKLLVATKQFW

SNPs (tot: 87)

Position	A %	C %	G %	T %	Probability
137	80			20	0.995493
140	83	16			0.994512
141	83	16			0.994512
142	83			16	0.994512
143	83			16	0.994512
144	83		16		0.994512
146	83			16	0.994512
147	83		16		0.994512
153			83	16	0.994512
159	83			16	0.994512
249		12	87		0.992554
251	87			12	0.992554
252		12	87		0.992554
253	87		12		0.992554
254	87			12	0.992554
255	87		12		0.992554
257	87	12			0.992554
259	87			12	0.992554
260	87			12	0.992554
261	87		12		0.992554
263	87		12		0.992554
264		87		12	0.992554
267		12	87		0.992554
270	12	87			0.992554
331		11		88	0.923564
332			11	88	0.923564
333	88			11	0.923564
335	88		11		0.923564
337	11			88	0.923564
343			11	88	0.923564
347		11	88		0.923564
400	83			16	0.994512
401			83	16	0.994512
402	83	16			0.994512
404	62	37			1.0
406	71			28	1.0
409			28	71	1.0
412	28	71			1.0
417	66			33	1.0
418	66		33		1.0
420	66	33			1.0
423		66	33		1.0
426	33	66			1.0
427	66	33			1.0
428	66			33	1.0
460	66		33		1.0
488	33		66		1.0
534	83			16	0.994512
536	60		20		0.99255
537	80	20			0.995493
575	12		87		0.992554
577		38		61	1.0
578	76		23		1.0
580		23		15	1.0
581			23	76	1.0
583			23	76	1.0
584	23	76			1.0
588			76	15	0.999983
592		23	76		1.0
595			76	23	1.0
596		23	76		1.0
692		14		85	0.999981
698		14		85	0.999981
699		14		85	0.999981
700			85	14	0.999981
704	85			14	0.999981
707		14		85	0.999981
708	14		85		0.999981
755	41	58			1.0
1177	33		66		0.997452
1178	66		33		0.997452
1179	33		66		0.997452
1712		35	64		1.0
1713	5		64	29	1.0
1714			29	70	1.0
1718	76	23			1.0
1735			19	80	1.0
1981			77	11	0.968132
1982		11	88		0.923564
1983	11			88	0.923564
1984		11		88	0.923564
1986		11		88	0.923564
1987	11			88	0.923564
2034	5			94	0.9982
2035		5		94	0.9982
2095		57		42	1.0
2177		46		53	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain