SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene2179

Length: 503 nt

UniGene Fasta

>uagpf_v2_unigene2179
CGTCGTGACCTTGGCTGTCATTCAGTTGTACCTTATCCACGCTCTATACTCAAACCAGCAAACTGAGTTTCCTCCTTGTTCGAGCTTTCCATTGCATTCCTTCGACTACAGCCCTCCCGGTCAAGAGTAACCTTAAAGACAGTAAGGGCATTTTGTCCATAAAATTTCGAATATTCCGGCAGTAAAGTTAAACTTGAGGCATGGTCAAGGCGTGAAACGAAGGAATGTTTGCAATACCAGTTATAATCCTAAGAACTTACCAGGGTTACCTTCAGAGGAGACGAGCTCATGGCTACAGCCTCCGCTTCCGCTTCCGCTCATTTGCAAGCCAATTTGGAGCAGGAGAAGAAATTTCGTGCTCGAGGGACTTCAGAAACCGTCCGCACTTCTTCTAGGTATTGGATTCGCCCTGGTGTCCATCAATCTTATAGCCCGCATCGAACATTGTACAGTCACTCTAGATCGGGAATTGGGATTGAAAATGGCTTCTGTGGCCCCTTCGC

Ace file of the UniGene uagpf_v2_unigene2179

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11586	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	ATP-binding cassette transporter, subfamily I, member 10, SmABCI10 n=2 Tax=Selaginella moellendorffii RepID=D8QQK4_SELML	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	64%
Blast2go	trigalactosyldiacylglycerol 1	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	lipid transport	GO:0006869	Biological Process	87%
Blast2go	lipid transporter activity	GO:0005319	Molecular Function	87%
Blast2go	ATP binding	GO:0005524	Molecular Function	87%
Blast2go	chloroplast outer membrane	GO:0009707	Cellular Component	87%
Blast2go	chloroplast inner membrane	GO:0009706	Cellular Component	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Permease domain	IPR003453	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXM7

Fln msg: Distance to subject end: 393 aas, your sequence is shorter than subject: 71 - 462

Fln protein: MATASASASAHLQANLEQEKKFRARGTSETVRTSSRYWIRPGVHQSYSPHRTLYSHSRSGIGIENGFCGPF

Protein Length: 72

Fln nts: CGTCGTGACCTTGGCTGTCATTCAGTTGTACCTTATCCACGCTCTATACTCAAACCAGCAAACTGAGTTTCCTCCTTGTTCGAGCTTTCCATTGCATTCCTTCGACTACAGCCCTCCCGGTCAAGAGTAACCTTAAAGACAGTAAGGGCATTTTGTCCATAAAATTTCGAATATTCCGGCAGTAAAGTTAAACTTGAGGCATGGTCAAGGCGTGAAACGAAGGAATGTTTGCAATACCAGTTATAATCCTAAGAACTTACCAGGGTTACCTTCAGAGGAGACGAGCTC_-_ATGGCTACAGCCTCCGCTTCCGCTTCCGCTCATTTGCAAGCCAATTTGGAGCAGGAGAAGAAATTTCGTGCTCGAGGGACTTCAGAAACCGTCCGCACTTCTTCTAGGTATTGGATTCGCCCTGGTGTCCATCAATCTTATAGCCCGCATCGAACATTGTACAGTCACTCTAGATCGGGAATTGGGATTGAAAATGGCTTCTGTGGCCCCTTCGC

Fln Alignment:

Contig2179___ASASASAHLQANLEQEKKFRARGTSETVRTSSRYWIRPGVHQSYSPHRTLYSHSRSGIGIENGFCGP
A9NXM7_______________AAASASTHLQTNLQQEKKFSAGGTSNTIWASSRYRISLGAHQSYCPQQALYS-PRLGCATENGFCGP

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
56		85		14	0.993533
57	85	14			0.993533
59		85		14	0.993533
60	85		14		0.993533
62	85	14			0.993533
65			85	14	0.993533
66	85		14		0.993533
68		14		85	0.993533
70			14	85	0.993533
71		85		14	0.993533
73	14			85	0.993533
75		85		14	0.993533
76		14		85	0.993533
77	14			85	0.993533
357		25		75	0.996473
365	75	25			0.996473
402		33		66	0.997452
404		33	66		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
301	318	TCCGCT TCCGCT TCCGCT	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain