SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene2162

Length: 1125 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene2162

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5495	8/9
SustainPine v2.0	sp_v2.0_unigene37614	1/9

Source	Descriptions	Term	Type	e value	Identity
AutoFact	polyribonucleotide nucleotidyltransferase [Arabidopsis thaliana] emb\|CAB43864.1\| polynucleotide phosphorylase [Arabidopsis thaliana] emb\|CAB43865.1\| polynucleotide phosphorylase [Arabidopsis thaliana] emb\|CAB87625.1\| polynucleotide phosphorylase [Arabidop	-	-	3.0e-40	72%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	65%
Blast2go	polyribonucleotide nucleotidyltransferase	-	-	4.2039e-45	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Polyribonucleotide nucleotidyltransferase.	EC:2.7.7.8	-	4.2039e-45	79%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Purine metabolism	00230		4.2039e-45	79%
Blast2go	Pyrimidine metabolism	00240		4.2039e-45	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	mRNA catabolic process	GO:0006402	Biological Process	4.2039e-45	79%
Blast2go	RNA processing	GO:0006396	Biological Process	4.2039e-45	79%
Blast2go	3'-5'-exoribonuclease activity	GO:0000175	Molecular Function	4.2039e-45	79%
Blast2go	RNA binding	GO:0003723	Molecular Function	4.2039e-45	79%
Blast2go	polyribonucleotide nucleotidyltransferase activity	GO:0004654	Molecular Function	4.2039e-45	79%
Blast2go	mitochondrion	GO:0005739	Cellular Component	4.2039e-45	79%

Source	InterPros	Term	Type	Identity
Sma3	Exoribonuclease, phosphorolytic domain 1	IPR001247	-	-
Sma3	Ribosomal protein S1, RNA-binding domain	IPR003029	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3	Polyribonucleotide nucleotidyltransferase	IPR012162	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Exoribonuclease, phosphorolytic domain 2	IPR015847	-	-
Sma3	Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type	IPR015848	-	-
Sma3		IPR018111	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: A9TVK9

Fln msg: Distance to subject end: 564 aas, your sequence is shorter than subject: 263 - 817

Fln protein: MGLRRGLRHANTAYRAISATSRVPLEHKVAGRYSSSQSSLLASSSLSSSRSRYSNPGLYLGLGSCVRRCSNASGTLEQICADAPSSWRQLPAMGEIFSEEVEVGSRLITFETGKLARFAAGAVVLGIKETKVLSTVVSQQGCGDRDFLPLTVDYREKHYAQGKIPNTFMRREGAPKERELLCGRVIDRSIRPLFPKGFYDDVQVIANVLSSDGDQDPDIMAATAASAALTISDIPWDGPIGVVRVGRIDGNFVVNPDMDELSL

Protein Length: 264

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGGAGCTAAAGCTTAAACCCTGGACGCCCACTAACTGTATCACCATTGTATTAAATCCTCGACGCCCACAAATTATCTGACCATGAAGGTAAAGCTTAAACCCTCGACACTGCCAAAGGGTTTAAGGTTCACCGGTGCGAAAGGCTAAACAAACATCGTTTGATTTTGGGAATGCTCACTTTCCCTGCATCTCTCCACATTTAATCCACCTGAAGCATTTTCATCGTTAATGGGTATTGCTTCCATCTGAACTCTTTTCATTCTTTGTTGGTATTGCCTACTGGCTGCCACAAGCTTTCCGACAGCTTCA_-_ATGGGTCTTCGAAGAGGTTTAAGGCACGCAAATACAGCTTACCGGGCCATTTCCGCAACTTCAAGAGTGCCTTTAGAACATAAAGTAGCTGGAAGATATTCGTCTTCACAGTCATCTCTGCTTGCTTCCTCAAGCTTGTCCAGCTCCCGCTCTAGATATTCCAATCCGGGTTTGTATCTGGGCTTGGGCTCTTGTGTGCGAAGATGTTCAAATGCTTCTGGCACGTTAGAGCAAATATGTGCAGATGCGCCTAGTTCATGGCGACAACTCCCTGCTATGGGTGAAATTTTTTCCGAGGAGGTGGAAGTTGGTTCACGATTAATTACATTCGAGACTGGCAAACTTGCAAGATTTGCAGCTGGTGCTGTAGTACTTGGTATAAAGGAGACTAAGGTGCTTTCAACTGTTGTATCTCAACAGGGGTGTGGAGATCGGGATTTTTTGCCACTCACGGTTGACTACCGGGAAAAACATTATGCACAAGGAAAAATTCCTAACACTTTCATGCGAAGAGAAGGTGCTCCCAAGGAGCGTGAGCTTTTGTGTGGCCGTGTTATTGACAGATCCATTCGTCCATTATTCCCCAAAGGATTTTATGATGATGTTCAGGTAATAGCCAATGTTCTTTCTTCTGACGGTGATCAAGACCCTGATATAATGGCTGCCACTGCTGCATCTGCCGCATTAACAATATCAGATATTCCATGGGATGGCCCTATAGGTGTGGTGCGTGTTGGAAGAATAGATGGGAACTTTGTTGTCAATCCTGATATGGATGAGCTAAGCTTAAG

Fln Alignment:

Contig2162___GLGSCVRRCSNASGTLEQICADAPSSWRQLPAMGEIFSEEVEVGSRLITFETGKLARFAAGAVVLGIKETKVLSTVVSQQGC-GDRDFLPLTVDYREKHYAQGKIPNTFMRREGAPKERELLCGRVIDRSIRPLFPKGFYDDVQVIANVLSSDGDQDPDIMXXXXXXXXLTISDIPWDGPIGVVRVGRIDGNFVVNPDMDELSL
A9TVK9_______________GFGRNVSNFSTISEPVLVTVPEVPAAWRTFPASGHVFQEEAEVGNMKMSFETGKLARFASGAVVVGVGETKVLVTVVADYKFDGGKDFLPLQVEYREKQYAQGKIPATFMRREGAPKERELLCGRLIDRSVRPLFPKGFFYDSQIIANVLCSDGDQDPDVLAVNAASAALVISDIPWKGPIGCVRIGRVKGKFIVNPNMDEFSL

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
191		20		80	0.995493
192		20		80	0.995493
197		20	80		0.995493
198	80			20	0.995493
199	80		20		0.995493
202	20		80		0.995493
248	20			80	0.995493
493		33		66	0.997452
494		66		33	0.997452
496	66	33			0.997452
498	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain