SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene2161

Length: 1030 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene uagpf_v2_unigene2161 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3704	21/22
SustainPine v2.0	sp_v2.0_unigene71877	1/22

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PB1 domain, putative [Oryza sativa Japonica Group] gb\|ABA93295.1\| PB1 domain containing protein, expressed [Oryza sativa Japonica Group] gb\|EAZ29667.1\| hypothetical protein OsJ_13729 [Oryza sativa Japonica Group] dbj\|BAH01706.1\| unnamed protein product [O	-	-	7.0e-26	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Blast2go	octicosapeptide phox bem1p domain-containing protein	-	-	0.0	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	66%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Phox/Bem1p	IPR000270	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Glycoside hydrolase, chitinase active site	IPR001579	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUV0

Fln msg: Overlapping hits, possible frame ERROR between 78 and 75, and possible frame ERROR between 344 and 386, your sequence is shorter than subject: 261 - 285

Fln protein: RRDLGVTHSNRVKFLCRYGGRILPxxxDGKRRDLGCHSRVVAASRSICFTDLIAKLSNVFGSAVLLKCQLPCEDLDALVSVKSDEDLENILEEYDRVGAREGLSLAVTHFFSLSxxxxxxxxxxxxxxxDRPPTEATIVKSLKAQDDSQVASSIPQQHQIYLRQDLHHFQHYPSQCSPLARSHLTNQISKRVSHIHQQHIVRAYPKKNRSWSTRWTGIPSDLQYSSDLMMKRPPEHNLFRMDQSFCARVLHRNNPQVQVR*

Protein Length: 262

Fln nts: CGTCGTGACCTTGGCGTCACTCATTCGAATCGTGTTAAGTTTCTGTGCAGATATGGTGGAAGGATTCTTCCCxxxxxxxxxGATGGCAAGCGTCGTGACCTTGGGTGTCACTCCAGGGTTGTTGCTGCCAGCAGAAGCATCTGTTTCACAGATCTGATTGCCAAGCTGTCGAATGTTTTCGGATCCGCCGTGCTGCTGAAATGCCAGTTGCCTTGCGAGGATCTGGATGCTTTGGTATCCGTTAAATCAGACGAGGATTTGGAGAATATCTTGGAGGAGTATGACAGGGTCGGTGCCAGAGAGGGTTTGTCCTTGGCTGTCACTCATTTCTTTTCCCTCTCTCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxATGACCGTCCTCCAACCGAGGCCACAATCGTCAAGTCCTTGAAAGCCCAGGACGATTCCCAGGTCGCGAGTTCGATTCCTCAACAGCATCAGATCTACCTGCGGCAAGATTTGCACCACTTCCAGCACTATCCTAGCCAATGCAGTCCTCTCGCTCGGAGTCATCTGACCAATCAAATTTCTAAACGTGTATCCCATATTCATCAACAACACATCGTACGGGCCTATCCCAAGAAAAATCGGTCTTGGTCTACACGGTGGACGGGCATTCCCTCCGACTTGCAGTACAGCAGCGACTTAATGATGAAGCGGCCACCTGAGCATAATCTTTTCCGGATGGACCAGTCTTTCTGTGCGCGCGTACTTCATCGGAATAATCCCCAGGTCCAGGTTCGATAATCAGCTGTAAATGGCACCAAATTCTCCATTCAAATTTCAATTCCATCGTACGCAGATTGGCGCCCCAGTGCCATTACAACAAAAATGGATTATATATATATTATATATTTACAGCTTCAAATACTAACGCCATCCACCCGTCGCCGCTTCTGCCCCAGCTGGTCCGACCGGAAGAGGAGGTCCCTAATCCCAACCCCAGCCTATGCAAATTGTTAGCTGAGTTGAAGGTTAATGATGAGCAGAGGCACT

Fln Alignment:

Contig2161___NRVKFLCRYGGRILPRxGDGKRRDLGCHSRVVAASRSICFTDLIAKLSNVFGS-AVLLKCQLPCEDLDALVSVKSDEDLENILEEYDRVGAREGLSLAVTHFFSLSLxxxxxxxxxxxxxxDRPPTEATIVKSLKAQDDSQVASSIPQQHQIYLRQDLHHFQHYPSQCSPLARSHLTNQISKRVSHIHQQHIVRAYPKKNRSWSTRWTGIPSDLQYSS-------DLMMK---RPPEHNLFRMDQSFCARVLHRNN-PQVQVR
A9NUV0_______________NRVKFLCRYGGRILPRxGDGKLRYAGGNTRVVAASRSIGFADLIAKMSKVFGSSAVLLKCQLPSEDLDALVSVKSDEDLENMLEEYDRVGAREGLSKVRAFLFPLSIxxxxxxxxxxxxxxDRPLAEAVIVKSVKPQNDAQVAVSNPQHHRIPQRRDLHHFQYYPTHSSPLAQNHPTNQFLTRRSHPHQQHAVRASAKNNR--LPLWTVVPSDLQYSSQVRYMNINLMMKPPPPPPQQKFLCIDRSFSARVVHRNNAPQVQVR

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
719	50			50	1.0
720	50			50	1.0
723	50			50	1.0
726	50	50			1.0
730		50	50		1.0
920			33	16	1.0
922	50			33	1.0
926	50			50	1.0
927		83	16		0.994512
928	50	33		16	1.0
929		50	50		1.0
932	50	16	33		1.0
933	50	16	33		1.0
934		33	66		1.0
937	40	60			1.0
941	60		40		1.0
942	40	60			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain