SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene2033

Length: 691 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene uagpf_v2_unigene2033 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1052	3/8
SustainPine v2.0	sp_v2.0_unigene33857	4/8
SustainPine v2.0	sp_v2.0_unigene63440	1/8

Source	Descriptions	Term	Type	Identity
AutoFact	Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q7Y141_ORYSJ	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	46%
Blast2go	retrotransposon unclassified	-	-	70%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	Cytosolic fatty-acid binding	IPR000463	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Multicopper oxidase, type 1	IPR001117	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	BRCT domain	IPR001357	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	Chaperonin TCP-1, conserved site	IPR002194	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	HhH-GPD domain	IPR003265	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Photosystem II PsbQ, oxygen evolving complex	IPR008797	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	GPI biosynthesis protein Pig-F	IPR009580	-	-
Sma3		IPR010256	-	-
Sma3	CCT domain	IPR010402	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	Multicopper oxidase, type 2	IPR011706	-	-
Sma3	Multicopper oxidase, type 3	IPR011707	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	BTB/POZ	IPR013069	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Domain of unknown function DUF1785	IPR014811	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Laccase	IPR017761	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
222	50	50			1.0
225	50	50			1.0
226	50		50		1.0
227	50			50	1.0
230		50	50		1.0
231		50		50	1.0
233		50		50	1.0
236	50	50			1.0
238		50	50		1.0
241	50		50		1.0
248	75			25	0.996473
261		75		25	0.996473
275	50		50		1.0
280		25		75	0.996473
288		25		75	0.996473
328			75	25	0.996473
339	85			14	0.993533
340	14		85		0.993533
344	14		85		0.993533
346	85			14	0.993533
356		85		14	0.993533
365	83		16		0.994512
373	16	83			0.994512
382	16		83		0.994512
389		83	16		0.994512
399	83		16		0.994512
424	16		83		0.994512
431	66		33		1.0
443	16	83			0.994512
446		83		16	0.994512
448	16		83		0.994512
449		16	83		0.994512
469		60		40	1.0
487	20			80	0.995493
492		75		25	0.996473
493	25		75		0.996473
497		75		25	0.996473
515	25		50	25	0.995533
520		66		33	0.997452
540	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain