SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene2017

Length: 1073 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene2017

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5468	8/8

Source	Descriptions	Term	Type	Identity
AutoFact	Glycosyltransferase n=2 Tax=Solanum RepID=Q50HV0_SOLLC	-	-	52%
FL-Next	sp=Probable beta-1,4-xylosyltransferase IRX14H; Arabidopsis thaliana (Mouse-ear cress).	-	-	52%
Blast2go	probable beta- -xylosyltransferase irx14h-like	-	-	71%

Source	ECs	Term	Type	e value	Identity
Blast2go	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase.	EC:2.4.1.135	-	0.0	71%

Source	KEGGs	Term	Identity
Blast2go	Glycosaminoglycan biosynthesis - chondroitin sulfate	00532	71%
Blast2go	Glycosaminoglycan biosynthesis - heparan sulfate	00534	71%
Blast2go	Metabolic pathways	01100	71%

Source	GOs	Term	Type	Identity
Blast2go	glucuronoxylan biosynthetic process	GO:0010417	Biological Process	71%
Blast2go	fruit development	GO:0010154	Biological Process	71%
Blast2go	xylem and phloem pattern formation	GO:0010051	Biological Process	71%
Blast2go	shoot development	GO:0048367	Biological Process	71%
Blast2go	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity	GO:0015018	Molecular Function	71%
Blast2go	xylosyltransferase activity	GO:0042285	Molecular Function	71%
Blast2go	membrane	GO:0016020	Cellular Component	71%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 43	IPR005027	-	0.0	-
Sma3	Tubulin, conserved site	IPR017975	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q9FH90

Fln msg: Distance to subject end: 187 aas, your sequence is shorter than subject: 325 - 492

Fln protein: MKPGSLQNCNRRNSLRLSPEHSVESVFKSPAAFFWLVLHGLCCIVSLVLGFRFSRLIFLLIFASSSNGPETPYHRPGSNLAGLQNIHGGATEVELDHPYNINAQANGDSNSNPNPNPNLVSQGKSSRVHVGRHGILIRPWPHPNSGEVMKAHQLLERVQLEQRLIYGVKDWRTVIVITPTYVRTFQSVHLTGLMHTLMLVPGKVVWIVIEAGGASNETATLVGRTGLKVIHIGFDEKMPVSWEERHQMEVRMRVQGLRVVRERKLDGVVMFADDSNTHNLELFDEIQSVKWVGALSIGILAYRGPSEILRMQATEEMKLDMKERG

Protein Length: 326

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTACACCAGAGCTCACGGGCTACAGAATTGAGTGAAACCCATCAAGCCCAAGGCTCACTAATACAGAAAAAA_-_ATGAAGCCGGGCTCATTACAGAATTGTAACAGGAGAAACAGCTTGAGGCTGAGTCCGGAACATTCAGTAGAGAGCGTGTTCAAGTCTCCAGCAGCCTTCTTCTGGTTAGTTCTTCACGGTCTCTGCTGCATTGTAAGTCTTGTACTGGGATTCAGGTTTTCTCGATTGATTTTTTTGTTGATTTTCGCCTCCTCGAGCAATGGCCCCGAGACTCCCTACCATCGCCCTGGATCGAATCTCGCAGGGCTTCAAAACATTCATGGTGGTGCCACCGAGGTCGAACTCGACCACCCATATAACATCAATGCGCAGGCGAATGGGGATTCCAACTCAAACCCTAACCCTAACCCTAATCTGGTTTCTCAGGGCAAGAGCAGCAGGGTCCATGTAGGGAGGCATGGGATCCTTATACGACCGTGGCCTCACCCGAATTCCGGCGAGGTTATGAAGGCCCATCAGCTTCTGGAGAGGGTTCAACTGGAACAGAGGTTGATTTATGGGGTTAAGGACTGGAGGACTGTAATTGTTATAACGCCTACTTATGTGAGGACTTTTCAGAGTGTGCATTTGACTGGTTTGATGCATACGCTTATGCTAGTGCCTGGGAAAGTTGTTTGGATTGTTATTGAGGCGGGCGGGGCTTCAAATGAGACTGCAACATTGGTGGGCAGAACAGGGCTGAAAGTGATCCACATTGGGTTCGATGAGAAGATGCCAGTATCTTGGGAGGAGCGACATCAGATGGAAGTGCGAATGCGTGTCCAAGGCTTGAGAGTTGTGAGGGAGCGAAAACTGGATGGTGTTGTCATGTTTGCTGATGACAGCAATACTCATAATTTGGAGCTTTTTGATGAGATACAGTCTGTGAAATGGGTGGGTGCATTGTCAATTGGCATTCTTGCATATCGTGGTCCCTCAGAGATATTACGGATGCAGGCAACTGAGGAAATGAAACTGGACATGAAGGAGAGGGGGG

Fln Alignment:

Contig2017___KMKPGSLQNCNRR-NSLRLSPEHSVESVFKSPAAFFWLVLHGLCCIVSLVXXXXXXXXXXXXXXXXXX-NGPETPYHRPGSNLAGLQNIHGGATEVELDHPYNINAQANGDXXXXXXXXXXLVSQGKSSRVHVGRHGILIRPWPHPNSGEVMKAHXXXXXXXXXXXXIYGVKDWRTVIVITPTYVRTFQSVHLTGLMHTLMLVPGKVVWIVIEAGGASNETATLVGRTGLKVIHIGFDEKMPVSWEERHQMEVRMRVQGLRVVRERKLDGVVMFADDSNTHNLELFDEIQSVKWVGALSIGILAYRGPSEIL
Q9FH90_______________KLSVFRLSYWNRRGSSFRSSPSLDPSFDGKSPSSVFWFVIHGLCCLISLILGFRFSHLVLFFLFSTSVTNLYTTPFLFAGN---------GGVSQLLRLKPLETATNS---------------TVKKNSRVVVGRHGIRIRPWPHPNPIEVLRAHQLLVRVQKEQKSMYGVRSPRTVIVVTPTYVRTFQALHLTGVMHSLMLVPYDLVWIVVEAGGITNETASFIAKSGLKTIHLGFDQKMPNTWEDRHKLETKMRLHALRVVREKKLDGIVMFADDSNMHSMELFDEIQTVKWFGALSVGILAHSGNADEL

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
175		25	75		0.996473
176			25	75	0.996473
178		75	25		0.996473
180	75	25			0.996473
181		25	75		0.996473
183		75		25	0.996473
184			25	75	0.996473
185		75	25		0.996473
187	75			25	0.996473
194		75		25	0.996473
195		25		75	0.996473
196	25			75	0.996473
324		80		20	0.995493
326		80	20		0.995493
331		20		80	0.995493
333			80	20	0.995493
334	80			20	0.995493
335	80		20		0.995493
336			20	80	0.995493
339		80	20		0.995493
340			80	20	0.995493
343		20	80		0.995493
344			80	20	0.995493
345		20	80		0.995493
346	20	80			0.995493
637	80			20	0.995493
639			20	80	0.995493
640		20		80	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
431	450	AACCCT AACCCT AACCCT AA	20

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain