SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene2003

Length: 760 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene uagpf_v2_unigene2003 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2951	12/21
SustainPine v2.0	sp_v2.0_unigene63895	8/21

Source	Descriptions	Term	Type	Identity
AutoFact	minichromosomal maintenance factor [Triticum aestivum]	-	-	73%
FL-Next	tr=DNA replication licensing factor MCM2, putative, expressed; Oryza sativa subsp. japonica (Rice).	-	-	71%
Blast2go	minichromosome maintenance protein 2	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	DNA unwinding involved in replication	GO:0006268	Biological Process	85%
Blast2go	DNA-dependent DNA replication initiation	GO:0006270	Biological Process	85%
Blast2go	regulation of cell proliferation	GO:0042127	Biological Process	85%
Blast2go	regulation of root meristem growth	GO:0010082	Biological Process	85%
Blast2go	embryo development	GO:0009790	Biological Process	85%
Blast2go	DNA binding	GO:0003677	Molecular Function	85%
Blast2go	ATP binding	GO:0005524	Molecular Function	85%
Blast2go	DNA-dependent ATPase activity	GO:0008094	Molecular Function	85%
Blast2go	nucleus	GO:0005634	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	Mini-chromosome maintenance, DNA-dependent ATPase	IPR001208	-	-
Sma3	Mini-chromosome maintenance, conserved site	IPR018525	-	-
Sma3	Mini-chromosome maintenance complex protein 2	IPR008045	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-

Full-Lengther Next Prediction

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
600	87			12	0.992554
609	87	12			0.992554
610	12		87		0.992554
611	12	87			0.992554
612	87		12		0.992554
615	12			87	0.992554
618	12			87	0.992554
619		12		87	0.992554
695	66	16	16		0.988813
697			16	83	0.994512
698		16	83		0.994512
699	83	16			0.994512
700	83	16			0.994512
701	33			66	1.0
703	83		16		0.994512
705			16	83	0.994512
706		83	16		0.994512
707	16			83	0.994512
708	50	33	16		1.0
709	83		16		0.994512
710	16		66		0.988813
711	50	33		16	1.0
716	20		20	60	0.99255
719		25		75	0.996473
725		75		25	0.996473
728		25		75	0.996473
730	25			75	0.996473
732			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain