SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene1980

Length: 1333 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene1980

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1926	57/60
SustainPine v2.0	sp_v2.0_unigene79977	1/60

Source	Descriptions	Term	Type	Identity
AutoFact	serine palmitpoyltransferase subunit2 [Nicotiana tabacum] gb\|ABW97709.1\| serine palmitoyltransferase long chain base subunit [Nicotiana benthamiana]	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	serine palmitoyltransferase	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:2.3.1.5-	-	0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	pollen development	GO:0009555	Biological Process	87%
Blast2go	sphingosine biosynthetic process	GO:0046512	Biological Process	87%
Blast2go	photomorphogenesis	GO:0009640	Biological Process	87%
Blast2go	pyridoxal phosphate binding	GO:0030170	Molecular Function	87%
Blast2go	protein binding	GO:0005515	Molecular Function	87%
Blast2go	serine C-palmitoyltransferase activity	GO:0004758	Molecular Function	87%
Blast2go	transferase activity, transferring nitrogenous groups	GO:0016769	Molecular Function	87%
Blast2go	vacuole	GO:0005773	Cellular Component	87%
Blast2go	endomembrane system	GO:0012505	Cellular Component	87%
Blast2go	membrane	GO:0016020	Cellular Component	87%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	Aminotransferase, class I/classII	IPR004839	-	-
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRT9

Fln msg: Overlapping hits, possible frame ERROR between 132 and 114, your sequence is shorter than subject: 248 - 493

Fln protein: RRDLGCHSLCKLPEIVAVCKKYKAYLYLDEAHSIGAVxxxxxxxxELL*VDTSDIDIMMGTFTKSFGSSGGYIAGSKDLIKYLKAVSPGHLYATAMSPPAVQQVISALKVILGEDGSNRGAQKLARIRENSNFFRAELQKMGCEVLGDHDSPVMPIMLYNPAKIPAFSRECFKRNIAVVTVAFPATPLLLSRVRICLSAAHTKEDLVKALEVISEVGDMVHIKYFPREPEKQLKEEQWQQNEAKKLS*

Protein Length: 249

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTATGCAAACTTCCAGAAATTGTAGCTGTCTGTAAGAAGTACAAGGCTTATTTATACTTGGATGAAGCGCATAGTATTGGAGCTGTTxxxxxxxxxxxxxxxxxxxxxxxxGAGCTTCTGTGAGTGGATACTTCTGATATTGATATTATGATGGGCACCTTCACGAAATCGTTTGGATCAAGTGGAGGTTACATTGCTGGATCCAAGGACCTCATTAAATACTTGAAGGCTGTCAGTCCTGGTCACCTCTATGCAACAGCTATGTCTCCACCTGCTGTGCAGCAGGTCATATCTGCTCTGAAAGTAATTCTTGGAGAAGATGGTTCAAATCGAGGAGCTCAAAAGCTTGCACGCATTCGAGAAAATAGCAATTTTTTCCGTGCTGAGTTGCAGAAGATGGGATGTGAGGTTCTGGGAGACCATGATTCACCTGTGATGCCAATAATGCTGTATAACCCAGCAAAAATTCCAGCCTTCTCTAGAGAATGCTTCAAACGCAATATTGCAGTGGTGACAGTTGCCTTTCCTGCAACACCTTTGCTATTATCAAGGGTACGCATTTGCTTGTCTGCCGCACATACCAAGGAGGATCTGGTGAAGGCATTGGAAGTAATTAGTGAGGTTGGTGATATGGTTCATATAAAATATTTTCCAAGGGAACCAGAGAAACAGCTTAAAGAGGAGCAGTGGCAACAGAATGAAGCGAAGAAGCTTTCTTAAACTCAAGCTGAGTCTTGTTATTACTGGCTTGACTGGCACCATGCTTGTTGATGCTGCTGCTGAAGCTTCCTACTACTGATGCGCTTGATGATTTGTTTTGAAGATGTCCAAGGGAATGCCTTTTGATGGCAATGTATTGTAAGACTGAAAACACATTTTATTGTGTAGATTAGCAAGCAAGATCATTACTTCTTCTAAGAGACTGAATGAACGTGTTCAATAGATACCCTCAAACATGTGGCTTGACTACATCTATTCCGGATTGTGTACCTGTAAATATACAGTTTTGACTGATTTATATTGATAGACTGTGCATTTTAGGGTCTTGAATGAACATGTGATAGAAGTTTCTCAATAAACTCGGGAGGGTTTCTCAATAAATTATTGCAAAGCTTCTATGTATAGTGTAGCATGTCATGCTAGAGGAGGTAAATACTGCCTTCAATTCTTCTGCCTTTTGAAATGTTCCATGAATTTTCTGTATGACATTCAGAACATTTCTGGGTCTTGGACAGGTTTACTGTTTCTAGGGCTGGCATAAATACAGTTTATATACACAATATCTGTGATATGAGGATGATTTTTTTTAC

Fln Alignment:

Contig1980___LCKLPEIVAVCKKYKAYLYLDEAHSIGAVGxxxxxxRELL*VDTSDIDIMMXXXXXXXXXXXXYIAGSKDLIKYLKAVSPGHLYATAMSPPAVQQVISALKVILGEDGSNRGAQKLARIRENSNFFRAELQKMGCEVLGDHDSPVMPIMLYNPAKIPAFSRECFKRNIAVVTVAFPATPLLLSRVRICLSAAHTKEDLVKALEVISEVGDMVHIKYFPREPEKQLKEEQWQQNEAKKLS
B8LRT9_______________LCKLPEIVAVCNKYKAYLYLDEAHSIGAIGxxxxxxCELLGVDTSDIDIMMGTFTKSFGSCGGYIAGSKDLIKYLKAVSPGHLYATAMSPPAVQQVISALKVILGEDGSNRGAQKLARIRENSNFFRAELQKMGCEVLGDHDSPVMPIMLYNPAKIPAFSRECLKRHVAVVGVAFPATPLLLARARMCLSASHTKEDLLKALEVISEVSDMVQIKYFPKDPEKQLKEEQWQQNERKKLS

SNPs (tot: 65)

Position	A %	C %	G %	T %	Probability
290		14		85	0.993533
294			14	85	0.993533
295		85		14	0.993533
296		85	14		0.993533
309			85	14	0.993533
321		50		50	1.0
540		20		80	0.995493
542	80			20	0.995493
547			20	80	0.995493
548	20		80		0.995493
553			25	75	0.996473
554		75	25		0.996473
558		75		25	0.996473
559	75	25			0.996473
562	75			25	0.996473
564	25	75			0.996473
622		33	66		1.0
628	66	33			1.0
629			66	33	1.0
630			66	33	1.0
631		66	33		1.0
632	66		33		1.0
633		33		66	1.0
636			66	33	1.0
637	66	33			1.0
639		33	66		1.0
652		14	85		0.993533
653			14	85	0.993533
655		14	85		0.993533
660		14		85	0.993533
661	85	14			0.993533
663			85	14	0.993533
666			14	85	0.993533
670	85		14		0.993533
672	85	14			0.993533
674	85	14			0.993533
675	85			14	0.993533
676		14		85	0.993533
743		22		77	0.999999
744			22	77	0.999999
747			22	77	0.999999
749	77		22		0.999999
751	77	22			0.999999
755	77			22	0.999999
756	77		22		0.999999
761	77			22	0.999999
762		22	77		0.999999
763	22			77	0.999999
766	22			77	0.999999
777		14	85		0.999981
782	85		14		0.999981
786			85	14	0.999981
795	6		12	81	0.999943
797		12	87		0.999964
798			12	87	0.999964
802		12		87	0.999964
803		12	87		0.999964
804		87		12	0.999964
810		82	5		0.999919
812		11	88		0.999952
814	88	11			0.999952
815		5	82	11	0.999919
828		9	90		0.999842
847		11		88	0.999952
1203			83	16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain