SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene1971

Length: 1285 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene1971

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4047	24/32
SustainPine v2.0	sp_v2.0_unigene79088	2/32

Source	Descriptions	Term	Type	Identity
AutoFact	Glucoamylase domain containing protein	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	63%
Blast2go	carboxyl-terminal peptidase	-	-	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	0.0	83%

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR001993	-	0.0	-
Sma3	Domain of unknown function DUF239	IPR004314	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A842

Fln msg: your sequence is shorter than subject: 294 - 399

Fln protein: RRDLGCHSDILRASNIERFGRKKPLSARPPGPKSADPDLLNESGHQHAITFVQGDKYYGAKATINVWDPKIQLSNEFSLSQLWVLAGSFDGDLNSIEAGWQVSPDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFIQVNSDIAMGATIYPVSNYGGSQYDISILVWKDPKEGNWWMQFGNNNVFGSWLSPLFSYLADSASMIEWGGEVVNSEPDGEHTSTQMGSGHFPDEGFGKASYFRNIQVVDGSNNLRAPKGLGIYTEASKCYDVQKGYNAAWGNFFYFGGPGKNEDCS*

Protein Length: 295

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGACATTTTGAGAGCAAGCAATATCGAGAGATTTGGGCGGAAGAAGCCATTATCTGCAAGGCCTCCGGGGCCTAAGTCTGCAGATCCTGATTTACTCAATGAAAGTGGGCATCAGCATGCCATAACTTTTGTTCAAGGAGACAAGTACTATGGAGCTAAAGCAACCATAAATGTCTGGGATCCTAAAATTCAGCTTTCAAACGAGTTCAGCTTGTCTCAGTTGTGGGTTCTGGCAGGTTCATTTGATGGGGATTTGAACAGTATTGAAGCAGGCTGGCAAGTGAGTCCAGATCTATATGGGGACAATAACACAAGGCTCTTCACATATTGGACTAGTGATGCTTATCAAGCTACTGGATGCTACAACTTGCTCTGCTCAGGATTCATACAAGTAAACAGTGATATTGCAATGGGCGCCACCATATATCCCGTGTCAAACTACGGGGGATCCCAATACGATATAAGCATCCTTGTTTGGAAGGATCCAAAAGAAGGGAACTGGTGGATGCAATTTGGAAATAACAATGTTTTCGGATCTTGGCTGTCACCTCTATTTTCCTACTTAGCAGACAGTGCCAGCATGATTGAATGGGGTGGTGAAGTTGTTAACTCTGAGCCAGATGGGGAACACACCTCCACTCAGATGGGCAGTGGTCATTTCCCAGATGAAGGATTCGGAAAAGCTAGTTACTTCCGGAATATCCAGGTAGTTGATGGATCGAATAATCTGAGAGCTCCAAAAGGATTAGGTATCTACACCGAGGCATCCAAGTGCTATGATGTTCAGAAAGGCTACAACGCCGCTTGGGGTAACTTCTTCTATTTTGGAGGTCCTGGGAAAAACGAAGATTGCTCTTGA___AAACATATCCGCAAGAGCAGGGCAGTGCCTGTGTACCATTGTAATTTTTCTATAATTGCCTCTCTGCTTGCAAGCTTGCAAGACAGTACTCCTACCTCTCATGAAATACAATATATTCTCTTCCTCAGAGATTGTAGATGCTCTGCCTCTGTGACAGTAGTCTTTTTTTTCTTCCCCTTGTCTCTTCTTGCATGATATTGTGGGCAAGTTCATCTGAAACAGAGAGCTGCCCTTTCCAACTGTATCAATGATATTTCTACGGGTTTCTGTAATCAGTGGTCTTCATAATCCAGTGCTCTGATTAGTTCAAGCTTTCCGAACTAATATTGTAAAGAGCTGTTAACATAAATTCAATTATTTGTATGGCTCTTTACTGTATGAGAATCTCAAATATATTTTTCAT

Fln Alignment:

Contig1971___DILRASNIERFGRKKPLSARPPGPKSADPDLLNESGHQHAITFVQGDKYYGAKATINVWDPKIQLSNEFSLSQLWVLAGSFDG-DLNSIEAGWQVSPDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFIQVNSDIAMGATIYPVSNYGGSQYDISILVWKDPKEGNWWMQFGNNNVFGSWLSPLFSYLADSASMIEWGGEVVNSEPDGEHTSTQMGSGHFPDEGFGKASYFRNIQVVDGSNNLRAPKGLGIYTEASKCYDVQKGYNAAWGNFFYFGGPGKNEDC
D5A842_______________DLMRADSPKRYGRKSHRAAR----FDQKPDV-NGFGHEHAIAYVQGEEYYGAKATINVWAPRIETLNEFSLSQLWVLSGSFDGSDLNSIEAGWQVSPELYGDTRPRLFTYWTSDSYQETGCYNLLCSGFVQTNNKIAIGASISPVSEFADTQYDITILIWKDPKEGNWWMEFADRTLVGYWPSELFTHLADHANMIEWGGEIVNTEAGGEHTSTQMGSGHFAEEGFGKASYFRNLEIVDSDNSLRGVSSMLTLAEHTYCYNIQNRYNIEWSNHFYFGGPGSNPRC

SNPs (tot: 65)

Position	A %	C %	G %	T %	Probability
127	66	33			0.997452
134	33		66		0.997452
136	66	33			0.997452
138		66		33	0.997452
139	66		33		0.997452
145		75		25	0.996473
150	75	25			0.996473
239		20		80	0.995493
245		80	20		0.995493
247		20	80		0.995493
248		20		80	0.995493
254		20	80		0.995493
259	20			80	0.995493
260		20	80		0.995493
261			80	20	0.995493
410		25		75	0.996473
411		75		25	0.996473
412	75			25	0.996473
415	75	25			0.996473
423	75	25			0.996473
424	25	75			0.996473
565		50		50	1.0
566			50	50	1.0
568	50	50			1.0
573		50		50	1.0
574	50	50			1.0
575		50		50	1.0
580		50		50	1.0
581	50		50		1.0
582			50	50	1.0
588	25			75	0.996473
591	33	33			0.997753
668	75			25	0.996473
669	75			25	0.996473
671	75		25		0.996473
761		90		10	0.90298
767	90		10		0.90298
768		10		90	0.90298
770	10			90	0.90298
772	80			20	0.999996
773		10	90		0.90298
779		87	12		0.992554
780	85			14	0.993533
781	85	14			0.993533
783	85	14			0.993533
784			85	14	0.993533
785		14	85		0.993533
792		22		77	0.999999
793	77		22		0.999999
796			22	77	0.999999
797	77			22	0.999999
798		80	20		0.999996
799	90		10		0.90298
800		90		10	0.90298
802			80	20	0.999996
803	70			30	1.0
805	10		90		0.90298
808	70		10	10	0.922578
810		80	20		0.999996
812		90		10	0.90298
813	70	10		10	0.922578
818		90	10		0.90298
819	10			90	0.90298
821		10		90	0.90298
822	10		90		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain