SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene1965

Length: 1205 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene1965

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene731	8/21
SustainPine v2.0	sp_v2.0_unigene7615	7/21
SustainPine v2.0	sp_v2.0_unigene65250	5/21

Source	Descriptions	Term	Type	Identity
AutoFact	dimethyladenosine transferase [Arabidopsis thaliana] gb\|AAC62868.1\| putative dimethyladenosine transferase [Arabidopsis thaliana] gb\|AAK64053.1\| putative dimethyladenosine transferase [Arabidopsis thaliana] gb\|AAM44912.1\| putative dimethyladenosine transf	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	dimethyladenosine transferase	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferred entry: 2.1.1.181, 2.1.1.182, 2.1.1.183 and 2.1.1.184.	EC:2.1.1.48	-	0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	rRNA methylation	GO:0031167	Biological Process	80%
Blast2go	rRNA (adenine-N6-)-methyltransferase activity	GO:0008988	Molecular Function	80%
Blast2go	rRNA (adenine-N6,N6-)-dimethyltransferase activity	GO:0000179	Molecular Function	80%
Blast2go	cytoplasm	GO:0005737	Cellular Component	80%
Blast2go	nucleus	GO:0005634	Cellular Component	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal RNA adenine methylase transferase	IPR001737	-	0.0	-
Sma3	Ribosomal RNA adenine dimethylase	IPR011530	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLX1

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 140 - 346

Fln protein: S*PWLSLVTWLSVRLCFNRKNKTLGAIFRQKAILSLLEKNYKTFQALQEACQKSNESSFGDVSILGDTSNDVSMDIDVGEDQGMDVDDADMQEGASQFKDKVLNILKEGGFEDKRSSKLAQDDFLYLLSLFNKAGIHFS*

Protein Length: 141

Fln nts: CGTCGTGACCTTGGCTGTCACTCGTGACTTGGCTGTCAGTCCGTCTCTGTTTTAATCGTAAAAATAAGACTTTAGGGGCGATCTTTAGGCAAAAGGCTATCTTGTCACTACTGGAAAAGAATTACAAGACATTTCAAGCATTGCAAGAAGCATGTCAGAAGTCAAATGAGTCTAGTTTTGGTGATGTGTCTATTTTGGGTGACACTAGCAATGATGTTAGTATGGACATTGATGTTGGGGAAGATCAAGGCATGGATGTTGATGATGCTGATATGCAGGAAGGGGCTTCTCAGTTTAAAGATAAAGTCTTAAATATCTTAAAAGAGGGAGGTTTTGAGGATAAAAGATCTTCCAAGCTTGCTCAGGATGATTTTTTGTATCTGTTATCCCTCTTTAACAAGGCCGGCATACATTTTTCTTGA___TTCATGTCTGGTCGGTTTTAAGTTTTAACCCACACAGAAACGGTTCTTGGAAATGTATGTTAATAGGAATCCCGAATTTTCCTCCGTCCTGCGGGATTTTTACTTTGGAGAGAAAGCTGTGAAAGCTTATCGTTGACAAGAAGACTTGCAGTGAGTGTTTTTCAGTCAAAAGGATTCAACGAAAGTTGTTAGCAGCTTCAATCAGTATGACATTTCATTCCCTGTCATTATTTCTGAAGTTTTTTGGCACATGCAAGCAGAAAATGTAGCACTTTTTGGATTCCTTGGCATAAAAGAAGAGTCCTTGTAACAGGGGCCAGCTAACAGTTCTGAGAAGTAGGTTTTAAAACAGGAGCGATTCAACAACATTGCTTTTAACGGAAGGTGCATCTCACCCTCCTCCGTTTCTCCATTGCTTTTTAATGGATAATAATTAATTCAACTCATTTGATTAGCATGAGCTTGGCTGTCACTCATTTTGATTTGTAATTAGCACACCACAGACGTGATTATGTTGCCAAACTTGTACTTGTACTTGACAGAGTTCAGGGTTGGGGCAAGAGTTCAGGGTCCCCTCTGAGCACATACTTGCCTCAGAGCAAACGCCTCATCTTTGCAAAAGTTCAGGGTTCCTCTGGGGCAGGAGTTCAGGGTCCCTCTGGGCACATACTTACCTCAGAGCAAATGCCTCATCTTTGCAAACCATAAACAGAGTTATCCTCTTATTTGAATATATGTTATGGTGTGAAATGAGTAGTTTAACTCCTATATAATGGCATATTG

Fln Alignment:

Contig1965___PWLSLVTWLS-VRLCFNRKNKTLGAIFRQKAILSLLEKNYKTFQALQEACQKSNESSFGDVSILGDTSNDVSMDIDVGEDQGMDVDDADMQEGASQFKDKVLNILKEGGFEDKRSSKLAQDDFLYLLSLFNKAGIHFS
B8LLX1_______________PPISFKEWDGMVRLCFNRKNKTLGAIFRQKAILSLLEKNYKTFQALQEAQQKSNESSFGDVSILGDTSNDVSMDIDAGEDQDMDVDDADMQEGASQFKDKVLNILKEGGFEDKRSSKLAQDDFLYLLSLFNKAGIHFN

SNPs (tot: 70)

Position	A %	C %	G %	T %	Probability
56		25		75	0.996473
58	75			25	0.996473
59	75		25		0.996473
60			25	75	0.996473
64	75		25		0.996473
65	75			25	0.996473
66	75	25			0.996473
68	75	25			0.996473
70	75	25			0.996473
91	83	16			0.994512
93			83	16	0.994512
95	83		16		0.994512
96	83			16	0.994512
97	83		16		0.994512
100		16	83		0.994512
103	83			16	0.994512
104			16	83	0.994512
105		83	16		0.994512
106		16		83	0.994512
108	50		50		1.0
116	16			83	0.994512
167		83		16	0.994512
177		16		83	0.994512
184	16		83		0.994512
190		16	83		0.994512
239		16		83	0.994512
254	16		83		0.994512
275	83		16		0.994512
276		50		50	1.0
279			83	16	0.994512
334	20		80		0.995493
335		20	80		0.995493
336		20		80	0.995493
339			20	80	0.995493
341	80	20			0.995493
342			80	20	0.995493
344	80			20	0.995493
345		20		80	0.995493
347	80	20			0.995493
348	80			20	0.995493
349	80	20			0.995493
350	20		80		0.995493
408		40		60	1.0
411		40	60		1.0
436			40	60	1.0
439		50	50		1.0
524			50	50	1.0
619		16		16	0.988813
620	16	83			0.994512
655	80			20	0.995493
886	50	25		25	0.995533
889	25	75			0.996473
890	50		25	25	0.995533
891		25		75	0.996473
894		50	50		1.0
895	50	50			1.0
896	50			50	1.0
897	50			50	1.0
902	50			50	1.0
903	50		50		1.0
905	25	50			0.995533
906	75		25		0.996473
907		75	25		0.996473
908		33		66	0.997452
909	33	66			0.997452
936	75	25			0.996473
938	75			25	0.996473
950	75	25			0.996473
954		25		75	0.996473
955	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain