SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene1946

Length: 968 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene1946

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2918	18/18

Source	Descriptions	Term	Type	e value	Identity
AutoFact	E3 ubiquitin-protein ligase [Arabidopsis thaliana] sp\|Q93Z92.1\|RING4_ARATH RecName: Full=E3 ubiquitin-protein ligase At4g11680; AltName: Full=RING finger protein At4g11680 gb\|AAL15343.1\| AT4g11680/T5C23_110 [Arabidopsis thaliana] gb\|AAR23720.1\| At4g11680/	-	-	0.0	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%

Source	InterPros	Term	Type	Identity
Sma3	Beta-lactamase-like	IPR001279	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	RNA-metabolising metallo-beta-lactamase	IPR011108	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	C-type lectin, conserved site	IPR018378	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

SNPs (tot: 64)

Position	A %	C %	G %	T %	Probability
65		25	75		0.996473
70			75	25	0.996473
74	75	25			0.996473
75	75			25	0.996473
77		75	25		0.996473
78			25	75	0.996473
81			25	75	0.996473
86			75	25	0.996473
87	75	25			0.996473
88	25		75		0.996473
273			33	66	1.0
274		16		83	0.994512
275		66	16	16	0.988813
276		66	33		1.0
278	50	16	33		1.0
279	83			16	0.994512
280		33	50		1.0
281	16	33		50	1.0
282		16		83	0.994512
283		16		83	0.994512
284	16	66	16		0.988813
285	16		83		0.994512
286		16	83		0.994512
290	16			83	0.994512
291		16	83		0.994512
294	16		83		0.994512
301		33	66		1.0
521		33		66	0.997452
524		66	33		0.997452
525	33	66			0.997452
526		33		66	0.997452
530			33	66	0.997452
533	66			33	0.997452
534	66		33		0.997452
535	66			33	0.997452
536		33		66	0.997452
596		20	80		0.995493
599		20		80	0.995493
600			20	80	0.995493
601	80			20	0.995493
605		20	80		0.995493
606	80	20			0.995493
608	80			20	0.995493
609	80		20		0.995493
611		20	80		0.995493
612	80			20	0.995493
613	80		20		0.995493
614	80			20	0.995493
617		20		80	0.995493
619	80	20			0.995493
620	20	80			0.995493
747			40	60	1.0
748			60	40	1.0
750	60		40		1.0
751	60			40	1.0
752	60		40		1.0
755	60	40			1.0
758			40	60	1.0
759			40	60	1.0
762	60		40		1.0
764		40	60		1.0
769	40		60		1.0
773	40	60			1.0
868		50	50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain