SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene1915

Length: 333 nt

UniGene Fasta

>uagpf_v2_unigene1915
CGTCGTGACCTTGGCTGTCACTCATTCATCAATGGGTGTTTATCTGTTCAGAGATTTGTCAAGATTATAGAGTTAAAGAGGAGAATTTTCCTTTTGTTATGACCAGACACGAGGACCATATTGGGAGGTGTCGCTGGGCAGGAGAGATAGCTTAACAGCAAGCAAAGCAGCAGTAGCTAAAAGCCTTCCGGCCCCAACATCGAATATTTCAACACTCATCTCCAAGTTTAAGGATCTAGGCCTCACACAAATTGATCTGGTTGTCCCATGTATATATCCATTTATCTTTATAAGATTCATCTGAAGACATGATCTATTTTAACTATACAAAGG

Ace file of the UniGene uagpf_v2_unigene1915

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10402	6/9

Source	Descriptions	Term	Type	Identity
AutoFact	Class III peroxidase n=2 Tax=Gossypium hirsutum RepID=A8W7V9_GOSHI	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	peroxidase 40	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Peroxidase.	EC:1.11.1.7	-	0.0	75%

Source	KEGGs	Term	Identity
Blast2go	Phenylalanine metabolism	00360	75%
Blast2go	Methane metabolism	00680	75%
Blast2go	Phenylpropanoid biosynthesis	00940	75%
Blast2go	Biosynthesis of phenylpropanoids	01061	75%
Blast2go	Metabolic pathways	01100	75%
Blast2go	Biosynthesis of secondary metabolites	01110	75%

Source	GOs	Term	Type	Identity
Blast2go	response to oxidative stress	GO:0006979	Biological Process	75%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	75%
Blast2go	heme binding	GO:0020037	Molecular Function	75%
Blast2go	peroxidase activity	GO:0004601	Molecular Function	75%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Alpha-N-acetylglucosaminidase	IPR007781	-	-
Sma3	GCN5-like 1	IPR009395	-	-
Sma3	Thymidylate kinase, conserved site	IPR018095	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NP92

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 119 aas, your sequence is shorter than subject: 101 - 338

Fln protein: VVTLAVTHSSMGVYLFRDLSRL*S*RGEFSFCYDQTRGPYWEVSLGRRDSLTASKAAVAKSLPAPTSNISTLISKFKDLGLTQIDLVVPCIYPFIFIRFI*

Protein Length: 102

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCATCAATGGGTGTTTATCTGTTCAGAGATTTGTCAAGATTATAGAGTTAAAGAGGAGAATTTTCCTTTTGTTATGACCAGACACGAGGACCATATTGGGAGGTGTCGCTGGGCAGGAGAGATAGCTTAACAGCAAGCAAAGCAGCAGTAGCTAAAAGCCTTCCGGCCCCAACATCGAATATTTCAACACTCATCTCCAAGTTTAAGGATCTAGGCCTCACACAAATTGATCTGGTTGTCCCATGTATATATCCATTTATCTTTATAAGATTCATCTGAAGACATGATCTATTTTAACTATACAAAGG

Fln Alignment:

Contig1915___TRGPYWEVSLGRRDSLTASKAAVAKSLPAPTSNISTLISKFKDLGLTQIDLV
A9NP92_______________TGGPSWEVLLGRRDSLTASKAAAESSLPAPTSDIKTLISKFKDVGLTQKDLV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
150			75	25	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain