SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene1840

Length: 436 nt

UniGene Fasta

>uagpf_v2_unigene1840
CGTCGTGACCTTGGCTGTCACTCAAATGCAGCAGTTGGAGTAGAGGAAATTCCCTGGCTTCATCAAATGCCGATTTTTTTGCAAAAGAATCTGTCAACTCAATATTTGATCCTAGCTTATATCATCGGTGTTCTCAACAAAGAGGACATAGACTGGTTGTCAGGGCAGAATCGGACTACTATAGTATTCTTGGAGTGTCGCGGAATGCCAGTAAATCAGAAATAAAAAGTGCTTATCGAAAACTTGCAAGACAATTTCATCCAGATGTAAACAAAGAAGCTGGCGCAGAGAAGAAATTCAAGGAAATCAGTAATGCCTATGAGGTTCTGTCGGATGATGAAAAACGCCCCATATATGACAAATATGGCGAAGCTGGACTTAAGGGTGTTGGTGCAGGCACTGGGGACTTTAGCAATCCATTTGATATTTTTGAATC

Ace file of the UniGene uagpf_v2_unigene1840

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9117	10/10

Source	Descriptions	Term	Type	Identity
AutoFact	DNAJ homologue [Oryza sativa]	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	protein	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	protein folding	GO:0006457	Biological Process	80%
Blast2go	response to heat	GO:0009408	Biological Process	80%
Blast2go	metal ion binding	GO:0046872	Molecular Function	80%
Blast2go	heat shock protein binding	GO:0031072	Molecular Function	80%
Blast2go	ATP binding	GO:0005524	Molecular Function	80%
Blast2go	unfolded protein binding	GO:0051082	Molecular Function	80%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	Chaperone DnaJ	IPR012724	-	-
Sma3	Chaperone DnaJ, C-terminal	IPR002939	-	-
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-
Sma3		IPR015609	-	-
Sma3	Heat shock protein DnaJ	IPR003095	-	-
Sma3	Heat shock protein DnaJ, cysteine-rich domain	IPR001305	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKL7

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 270 aas, your sequence is shorter than subject: 144 - 449

Fln protein: S*PWLSLKCSSWSRGNSLASSNADFFAKESVNSIFDPSLYHRCSQQRGHRLVVRAESDYYSILGVSRNASKSEIKSAYRKLARQFHPDVNKEAGAEKKFKEISNAYEVLSDDEKRPIYDKYGEAGLKGVGAGTGDFSNPFDIFE

Protein Length: 145

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATGCAGCAGTTGGAGTAGAGGAAATTCCCTGGCTTCATCAAATGCCGATTTTTTTGCAAAAGAATCTGTCAACTCAATATTTGATCCTAGCTTATATCATCGGTGTTCTCAACAAAGAGGACATAGACTGGTTGTCAGGGCAGAATCGGACTACTATAGTATTCTTGGAGTGTCGCGGAATGCCAGTAAATCAGAAATAAAAAGTGCTTATCGAAAACTTGCAAGACAATTTCATCCAGATGTAAACAAAGAAGCTGGCGCAGAGAAGAAATTCAAGGAAATCAGTAATGCCTATGAGGTTCTGTCGGATGATGAAAAACGCCCCATATATGACAAATATGGCGAAGCTGGACTTAAGGGTGTTGGTGCAGGCACTGGGGACTTTAGCAATCCATTTGATATTTTTGAATC

Fln Alignment:

Contig1840___KCSSWSRGNSLASSNADFFAKESVNSIFDPSLYHRCSQQRGHRLVVRAESDYYSILGVSRNASKSEIKSAYRKLARQFHPDVNKEAGAEKKFKEISNAYEVLSDDEKRPIYDKYGEAGLKGVGAGTGDFSNPFDIFE
B8LKL7_______________QCSSWSRGNSLASSNAALFAKESVHSIFDPSLYHRCSQQRGHRLVVRAESDYYSILGVSRNASKSEIKSAYRKLARQYHPDVNKESGAEKKFKEISNAYEVLSDDEKRPIYDKYGEAGLKGVGAGTGDFSNPFDIFE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain