SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene1816

Length: 1478 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene1816

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5417	56/58

Source	Descriptions	Term	Type	Identity
AutoFact	putative basic-leucine zipper transcription factor bZIP69 [Arabidopsis thaliana] gb\|AAF80130.1\|AC024174_12 Contains similarity to a b-Zip binding protein from Arabidopsis thaliana gb\|Z86093 and contains a b-Zip transcription factor PF\|00170 domain. ESTs g	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	transcription factor 21	-	-	61%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	61%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	61%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	61%
Blast2go	protein dimerization activity	GO:0046983	Molecular Function	61%
Blast2go	nucleus	GO:0005634	Cellular Component	61%

Source	InterPros	Term	Type	e value	Identity
Sma3	bZIP transcription factor, bZIP-1	IPR011616	-	0.0	-
Sma3	Basic-leucine zipper domain	IPR004827	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLI3

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 183 - 474

Fln protein: S*PWLMRYISELERRVQTLQTEATTLSAQLTLLQRDTTGLTTENNELKLRLQAMEQQAQLRDALNEALREKVQRLKIATGQLSSNNTNAFNMSATAQLLPLCRSFFPPTQHSHRLNQQFQPFQHSASAMNNQPLMGQSQVHQNFPQYGPAGQLQVLVGSQGGPSVESEVSSSSVNHPGSSAF*

Protein Length: 184

Fln nts: CGTCGTGACCTTGGCTGATGCGTTATATATCAGAGTTAGAACGAAGAGTTCAAACACTGCAGACGGAAGCAACTACTCTTTCGGCTCAGCTTACATTGTTGCAGAGAGATACAACAGGACTAACCACCGAGAACAATGAACTGAAGCTGCGACTGCAGGCTATGGAGCAACAAGCACAACTTCGGGATGCTTTGAATGAGGCTTTGAGAGAAAAAGTACAAAGGCTGAAGATTGCTACTGGCCAACTTTCATCAAACAATACAAATGCCTTCAACATGTCTGCAACTGCACAACTCTTGCCCTTGTGTCGTTCATTTTTCCCTCCAACCCAACATTCACATCGTTTGAATCAACAATTTCAGCCATTTCAGCATTCTGCATCTGCAATGAATAATCAGCCATTAATGGGGCAGTCTCAGGTGCATCAGAACTTTCCCCAGTATGGTCCTGCAGGCCAATTGCAAGTGCTTGTGGGCAGTCAAGGTGGGCCTTCTGTAGAATCAGAAGTGTCCTCTAGTTCTGTTAACCATCCTGGTAGTTCTGCGTTTTAG___ATGGAGAGAATTTGTGGAAGTGACAGTATTAATCAGTAAGTGGAGTTCTGGCTTTATCAGTGGCCAAGACGGCTGTTCTCATGAAAATCCTTGTGCGATTACGGTCCTTGTTTTGATTGTTATACCCAAATTGACTGCACCTGTTCTTATCATTGAAAGTAAAAGTTGTAAAATCATTTGGTCCATCGCCAGATCCCTCAGAAAAGCTTTAATACATTTCAGCTGTCTTCATGCTGTAATGGACACCAAGACTATTATATGTCATGTAGGTTGGCAAATGGGCATGCTTACCTGTAGCTGATGGAGCATGCCGTCTTTCTACTTCGAGTCTTGCTTTCTGTTTATGAGCCTGGAGTATGTATTTCATTTTTTTAGTGTAACCATGGCTTAGCCTATCAATAGTCGATGCCTTCGCATTAACCAGTGCCAAACTATTAGTGCTTAGATTACTAGATCCTTTAATGCTTCATGCTATTCTGCCCCCAATCAATAAGAACCGCATGGTTTTCTCAGCACACGAGCAGTTGTGGAAGTAGGCATATTCTTTTAAGACAACTTGATAATAATAGCTACTATTCTTTTAGACCTGCCCAACAATATTGTACTTAAAAGTTGTGGCATTGAGTCAGTTCATCCTATCATCTGGGATCTCCTTCAGCCACATGGTAAAGATAACAAAAATTGGGCGTCTTCGGTGGGCAGGCATGTTGAACGATGGAAAAGGTACATGATAGTTGCTGTTGTCAATGTACAAAAGTTGGCAACTGCAGGTCCATATCCTAGTGTATGATATTTGTTTTTGTGTGCTACGTCTCTTAATTCAAGTTCTGCTTTCCTCTTCAGGAGAGGTTAAATCGAGGAGGAAAGGCTATGATTATGATATTGCCATTAGATGTTCACACCTCGTCAAAACTCTGGAACAGTATG

Fln Alignment:

Contig1816___MRYISELERRVXXXXXXXXXXXXXXXXXXRDTTGLTTENNELKLRLQAMEQQAQLRDALNEALREKVQRLKIATGQLSSNNTNAFNMSATAQLLPLCRSFFPPTQHSHRLNQQFQPFQHSASAMNNQPLMGQSQVHQNFPQYGPA
B8LLI3_______________MRYISELERRVQTLQTEATTLSAQLTMLQRDTTGLTTENNELKLRLQSMEQQAQLRDALNETLREKVQRMKIATGQLSSNNANAFNMSATAQQLPLNRSFFSPTQHSHRLNQQFQSFQHPPSAMNNQPLMGQSQVHQNFPQYGSA

SNPs (tot: 115)

Position	A %	C %	G %	T %	Probability
18	66			33	0.997452
19		33		66	0.997452
20	33		66		0.997452
22			66	33	0.997452
23		33		66	0.997452
24	33			66	0.997452
66			80	20	0.995493
67	80	20			0.995493
68	80		20		0.995493
69			80	20	0.995493
70		80	20		0.995493
72	80	20			0.995493
75	80			20	0.995493
76		80	20		0.995493
77			20	80	0.995493
80			20	80	0.995493
84	20		80		0.995493
337	55		44		1.0
338	55		11	33	1.0
340	55		33	11	1.0
341			11	88	0.923564
342			33	66	1.0
343	33	66			1.0
344	66	33			1.0
346	66			33	1.0
348		66	33		1.0
352			33	66	1.0
354		33	66		1.0
356	66	33			1.0
425	88			11	0.923564
426		11	88		0.923564
432		11		88	0.923564
434	88			11	0.923564
435			88	11	0.923564
436	88		11		0.923564
437	88		11		0.923564
440			11	88	0.923564
445	11	88			0.923564
523	81	18			0.999994
526			18	81	0.999994
527	18	81			0.999994
528		18		81	0.999994
529		18	81		0.999994
532	81		18		0.999994
533	81		18		0.999994
535		84		15	0.999986
536	76		23		1.0
542	15	7	76		0.999983
597	78	21			1.0
598			89	10	0.999919
600		10	84		0.999846
602	78	5		15	1.0
604	10		5	84	0.999846
605		15		84	1.0
607		14		85	1.0
609	4	4	80	9	0.999537
611			9	90	0.999872
613		9	9	80	0.999537
617	90	10			0.999898
618			80	10	0.99967
623		90		10	0.999898
624	90		10		0.999898
625	90			10	0.999898
626		10	90		0.999898
629			90	10	0.999898
630		10	90		0.999898
631	10	90			0.999898
648		47	9	42	1.0
650		9		90	0.999872
656		9	90		0.999872
657	90			9	0.999872
659			9	90	0.999872
660	90		9		0.999872
662			90	10	0.999898
666	10	90			0.999898
667		10		90	0.999898
669		10	89		0.999919
670	11			88	0.999937
833	10		89		0.999919
960	75	25			0.996473
972		75	25		0.996473
975	75			25	0.996473
976			25	75	0.996473
978	75	25			0.996473
1012	85	14			0.993533
1014	85		14		0.993533
1015	14			85	0.993533
1020			14	85	0.993533
1021	85		14		0.993533
1022	85	14			0.993533
1030		14		85	0.993533
1031			85	14	0.993533
1043		85	14		0.993533
1044		85		14	0.993533
1045	85	14			0.993533
1046	85		14		0.993533
1048		85	14		0.993533
1050	85	14			0.993533
1051		14		85	0.993533
1052	85			14	0.993533
1053	85			14	0.993533
1056	85		14		0.993533
1058		85		14	0.993533
1062		16		83	0.994512
1063			83	16	0.994512
1064		16	83		0.994512
1065	16			83	0.994512
1077	87			12	0.992554
1080	88			11	0.923564
1084		11	88		0.923564
1085		11		88	0.923564
1242		28		71	1.0
1244	9	9	63		0.999997
1245		18	72		0.999994
1246	9	9	63	18	0.999997

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain