SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene1783

Length: 1126 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene1783

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10734	36/38
SustainPine v2.0	sp_v2.0_unigene70182	1/38

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF599 domain containing protein	-	-	7.0e-39	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Blast2go	protein	-	-	0.0	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	0.0	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	O-methyltransferase, family 2	IPR001077	-	0.0	-
Sma3	Protein of unknown function DUF599	IPR006747	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NL95

Fln msg:

Fln protein: MLGLNLDLILVPTGILFMVAYHIYLLYRIIKHPNTTVIGFENGNRRVWVQQMMENMPSNTGLALQVIASNISAAVYLISLSITLSSLIGTLVGASTTSSGTASTKGLVNVIIFGDKSAFTASVTFAVPLVCFLTAFMSHVQCIRYYIHVSFLISTPHSSVPADYIENSVIRGSNFWSLGLRAYYFAFPLLLWIFGPIPMFICSLGMVSTLYFLDSTVNPIPPFPIKSSSSKSMAGAVLDIGRGIESNSGLNQYRRGSLP*

Protein Length: 261

Fln nts: CTGTCACGTCGTGACCTTGGCTGTCACTCAGGATTCGAGCGTAATTGGGCTTTGATTTCATTTCATTTGCTTAGCTACCATTGAATTGCAGCAGTAGCAAAG_-_ATGCTGGGCCTGAATCTGGACTTGATACTGGTTCCCACAGGCATTCTTTTCATGGTGGCCTACCATATCTACCTTCTCTACAGAATCATCAAGCATCCCAATACTACTGTAATAGGATTCGAAAACGGCAACAGGAGAGTCTGGGTACAGCAGATGATGGAGAATATGCCGAGCAATACCGGACTCGCTCTTCAAGTCATAGCGAGCAACATATCTGCCGCGGTTTATCTCATCAGTCTCTCCATAACCCTCAGCTCTCTGATCGGCACCTTGGTGGGCGCCAGCACAACCAGCAGCGGCACCGCGAGCACCAAAGGCCTGGTAAATGTAATAATCTTTGGGGATAAGAGCGCCTTTACAGCGTCTGTGACCTTTGCTGTGCCTCTGGTTTGTTTCTTGACCGCCTTCATGTCACATGTACAGTGCATTCGTTATTACATTCATGTAAGCTTTTTGATCAGTACGCCGCATTCAAGTGTCCCGGCCGATTACATTGAGAATTCCGTGATCAGAGGTAGCAATTTCTGGTCTCTGGGATTGAGGGCTTATTACTTTGCTTTCCCGCTTCTTCTCTGGATCTTTGGCCCCATACCCATGTTTATCTGCTCACTGGGAATGGTCTCCACACTGTATTTTCTTGATTCTACCGTTAATCCCATCCCGCCTTTTCCAATCAAGTCGTCCTCCTCCAAGTCTATGGCAGGGGCCGTACTGGATATTGGTCGCGGGATCGAATCCAACTCCGGGCTCAATCAGTACAGACGAGGCAGCTTGCCTTAG___TTGCAATGAATAAAGTCCCACTTACCTCAGACATCGTTTTTAATTTATGCTCTATATTTGTAATAATACCACTATTATATTTTATGTGGATGCATCCTCACTGTAGCGCGGTCTGAAAGCAAGAAGAGTTTTTGAAGCAGGGACTTGCGTGGTGGCTCGAACCTGGAATCTGTTAGAAATCATGCCGTGCTGTTATCTGTTTCACTTTAACTTTGTGATTGCTTTTGTTTTTAGCTTTATGGAA

Fln Alignment:

Contig1783___MLGLNLDLILVPTGILFMVAYHIYLLYRIIKHPNTTVIGFENGNRRVWVQQMMENMPSNTGLALQVIASNISAAVYXXXXXXXXXXXXGTLVXXXXXXXXXXXXKGLVNVIIFGDKSAFTASVTFAVPLVCFLTAFMSHVQCIRYYIHVSFLISTPHSSVPADYIENSVIRGSNFWSLGLRAYYFAFPLLLWIFGPIPMFICSLGMVSTLYFLDSTVNXXXXXXXXXXXXXXMAGAVLDIGRGIESNSGLNQYRRGSL
A9NL95_______________MLGINLDLVLVPTGILFMVGYHIYLVYRIIKHPNSTVIGFENGNRRVWVQQMMENMPSNTGLALQVVASNISAAVYLVSLSITLSSLIGTLVGASTSSGSTATNKGLVNVIIFGDKSAVTASIKYVSLLICFLIAFMSHVQCIRYYIHVSFLISTPRSSVPADYIENSVIRGSNFWSLGLRAYYFAFPLLLWIFGPIPMFVCVLGLISTLYFLDSTVN-----PIPPFAVKSSSKGMADIGRGIESNAGRNQCSLGGL

SNPs (tot: 94)

Position	A %	C %	G %	T %	Probability
44	83	16			0.994512
45			16	83	0.994512
48	16		83		0.994512
49		16	83		0.994512
53			16	83	0.994512
55	83	16			0.994512
57			16	83	0.994512
61		16		83	0.994512
63		16		83	0.994512
64	16	83			0.994512
120		14	85		0.993533
122	85			14	0.993533
124			14	85	0.993533
128		14		85	0.993533
129	85	14			0.993533
130		87		12	0.992554
132		12	87		0.992554
136	12			87	0.992554
138	12	87			0.992554
139	12	75		12	0.975346
140	75		12	12	0.975346
141		87	12		0.992554
143	87			12	0.992554
145			87	12	0.992554
237	88			11	0.923564
238		11	88		0.923564
240	88			11	0.923564
243		11	88		0.923564
244		11		88	0.923564
245		88		11	0.923564
249		11	88		0.923564
251	88			11	0.923564
254			88	11	0.923564
261	88			11	0.923564
305	90	10			0.90298
309	90			10	0.90298
313	88	11			0.923564
315	88			11	0.923564
316		10		90	0.90298
317	80		20		0.999996
318			10	90	0.90298
324			80	20	0.999996
325		90		10	0.90298
326	10		90		0.90298
329		10		90	0.90298
331	90		10		0.90298
334	10			90	0.90298
386		87		12	0.992554
387	87	12			0.992554
399	87		12		0.992554
400			87	12	0.992554
403			87	12	0.992554
404		87	12		0.992554
408			87	12	0.992554
409		87		12	0.992554
415		85		14	0.993533
416		85	14		0.993533
417	85			14	0.993533
418	85	14			0.993533
420		14	85		0.993533
421			85	14	0.993533
423	14	85			0.993533
441		14		85	0.993533
442			14	85	0.993533
444		14	85		0.993533
446			85	14	0.993533
449		16		83	0.994512
450	83	16			0.994512
451	83			16	0.994512
452			83	16	0.994512
453	83		16		0.994512
458		80		20	0.995493
460	20			80	0.995493
461		20		80	0.995493
463	80	20			0.995493
464	20	80			0.995493
468			50	50	1.0
474		50	50		1.0
476	50	50			1.0
477	50	50			1.0
479	50			30	1.0
480			30	70	1.0
483			20	80	0.999996
484		20	80		0.999996
485	50			50	1.0
486		30	70		1.0
487	30	50		20	1.0
490	20		50		1.0
493	30	10	50		1.0
495	10			90	0.90298
616		90		10	0.999898
617	90		10		0.999898
619	89	10			0.999919
620			89	10	0.999919

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain