SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene1777

Length: 1023 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene1777

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8092	24/27

Source	Descriptions	Term	Type	e value	Identity
AutoFact	BAH and TFIIS domain-containing protein [Arabidopsis thaliana] emb\|CAB41133.1\| putative protein [Arabidopsis thaliana] gb\|AEE78362.1\| BAH and TFIIS domain-containing protein [Arabidopsis thaliana]	-	-	3.00018e-42	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Blast2go	dna binding	-	-	0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	transcription regulator activity	GO:0030528	Molecular Function	78%
Blast2go	DNA binding	GO:0003677	Molecular Function	78%
Blast2go	nucleus	GO:0005634	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Bromo adjacent homology (BAH) domain	IPR001025	-	-
Sma3	Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type	IPR003617	-	-
Sma3		IPR004253	-	-
Sma3		IPR010990	-	-
Sma3		IPR014754	-	-
Sma3		IPR014765	-	-
Sma3	Transcription factor IIS, N-terminal	IPR017923	-	-

Full-Lengther Next Prediction

SNPs (tot: 60)

Position	A %	C %	G %	T %	Probability
169		33	66		0.997452
172			33	66	0.997452
176		33	66		0.997452
179	66		33		0.997452
181	66	33			0.997452
182			66	33	0.997452
186	33		66		0.997452
187	66	33			0.997452
188			66	33	0.997452
190	33			66	0.997452
285		25	75		0.996473
286	75		25		0.996473
290	75		25		0.996473
293	25			75	0.996473
294		25		75	0.996473
295		25	75		0.996473
296			75	25	0.996473
297	75			25	0.996473
299	75		25		0.996473
304	25		75		0.996473
329		66	33		1.0
332		66	33		1.0
334			33	66	1.0
335	33			66	1.0
336	66	33			1.0
337	66	33			1.0
342	66			16	0.988813
343	66	16	16		0.988813
345	66	16			0.988813
347		16	16	66	0.988813
350	16		66		0.988813
351	83	16			0.994512
354	16			83	0.994512
403			14	85	0.993533
404	85			14	0.993533
405			14	85	0.993533
407		14	85		0.993533
408	83	16			0.994512
410		83		16	0.994512
411		83	16		0.994512
412		83	16		0.994512
414	83			16	0.994512
416	83			16	0.994512
417		16		83	0.994512
421	16			83	0.994512
699	80	20			0.995493
700			20	80	0.995493
707		20	80		0.995493
708	80	20			0.995493
709	80			20	0.995493
710			80	20	0.995493
716	80	20			0.995493
717			80	20	0.995493
781	85		14		0.993533
782	85			14	0.993533
787		16		83	0.994512
790			83	16	0.994512
795	83			16	0.994512
796		16	83		0.994512
865	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain